How-To Guide

Currently, the project has one working workflow:

• Collecting and Converting CDEs
  • Overview
  • Converting NIH/NLM CDEs
  • Converting PhenX CDEs
  • Converting RADx-UP CDEs
  • Customizing Conversions
  • Validation
  • Next Steps

Converting CDEs to LinkML

Collecting and Converting CDEs

Learn how to use the cde2linkml tool to convert CDEs from various repositories into LinkML schemas

Future Workflows

Additional workflows for AI-assisted mapping, human curation, and data harmonization are planned. See the Project Roadmap for details.