RADx-UP CDE Schema

Overview

The RADx-UP (Rapid Acceleration of Diagnostics - Underserved Populations) CDE schema represents data elements used in COVID-19 testing and outcomes research focused on underserved populations.

Schema Details

  • ID: https://example.org/schemas/radx_up_cde

  • Name: RADx_UP_CDESchema

  • Version: 1.0.0

  • Source: RADx-UP Initiative

Structure

The RADx-UP schema includes data elements for:

  • COVID-19 testing protocols

  • Demographics and social determinants of health

  • Clinical outcomes

  • Community engagement measures

  • Health equity indicators

Data Dictionary

The schema is based on the RADx-UP Phase 3 Tier 1 and Tier 2 data dictionary.

Usage

from linkml_runtime.utils.schemaview import SchemaView

schema = SchemaView("linkml/radx_up_schema.yaml")
classes = schema.all_classes()
print(f"Schema contains {len(classes)} classes")

Files

  • Schema definition: linkml/radx_up_schema.yaml

  • Source data: data/radx-up/RADxUP_1.7_Phase3_Tier1_Tier2_DataDictionary-1.csv