gpsea package
GPSEA is a library for analyzing genotype-phenotype correlations in cohorts of rare disease patients.
Subpackages
- gpsea.analysis package
- gpsea.model package
CohortPatientSampleLabelsSexPhenotypeDiseaseVariantVariantClassVariantCoordinatesImpreciseSvInfoVariantInfoVariantInfoAwareGenotypeGenotypesGenotypedTranscriptAnnotationVariantEffectTranscriptInfoAwareTranscriptCoordinatesProteinMetadataProteinFeatureFeatureInfoFeatureType- Subpackages
- gpsea.preprocessing package
configure_caching_patient_creator()configure_patient_creator()configure_caching_cohort_creator()configure_cohort_creator()configure_default_protein_metadata_service()configure_protein_metadata_service()VariantCoordinateFinderFunctionalAnnotatorImpreciseSvFunctionalAnnotatorProteinMetadataServicePatientCreatorCohortCreatorPhenopacketVariantCoordinateFinderPhenopacketPatientCreatorload_phenopacket_folder()load_phenopacket_files()load_phenopackets()TranscriptCoordinateServiceGeneCoordinateServicePhenotypeCreatorProteinAnnotationCacheProtCachingMetadataServiceUniprotProteinMetadataServiceVepFunctionalAnnotatorVariantAnnotationCacheVarCachingFunctionalAnnotatorVVHgvsVariantCoordinateFinderVVMultiCoordinateServiceAuditorDataSanityIssueLevelNotepadNotepadTreeDefaultImpreciseSvFunctionalAnnotator
- gpsea.view package