Class: Association

URI: https://w3id.org/monarch/monarch-py/:Association

 classDiagram
    class Association
      Association <|-- DirectionalAssociation

      Association : aggregator_knowledge_source

      Association : category

      Association : frequency_qualifier

      Association : frequency_qualifier_category

      Association : frequency_qualifier_closure

      Association : frequency_qualifier_closure_label

      Association : frequency_qualifier_label

      Association : frequency_qualifier_namespace

      Association : has_evidence

      Association : id

      Association : negated

      Association : object

      Association : object_category

      Association : object_closure

      Association : object_closure_label

      Association : object_label

      Association : object_namespace

      Association : onset_qualifier

      Association : onset_qualifier_category

      Association : onset_qualifier_closure

      Association : onset_qualifier_closure_label

      Association : onset_qualifier_label

      Association : onset_qualifier_namespace

      Association : original_object

      Association : original_subject

      Association : pathway

      Association : predicate

      Association : primary_knowledge_source

      Association : provided_by

      Association : publications

      Association : qualifiers

      Association : relation

      Association : sex_qualifier

      Association : sex_qualifier_category

      Association : sex_qualifier_closure

      Association : sex_qualifier_closure_label

      Association : sex_qualifier_label

      Association : sex_qualifier_namespace

      Association : stage_qualifier

      Association : stage_qualifier_category

      Association : stage_qualifier_closure

      Association : stage_qualifier_closure_label

      Association : stage_qualifier_label

      Association : stage_qualifier_namespace

      Association : subject

      Association : subject_category

      Association : subject_closure

      Association : subject_closure_label

      Association : subject_label

      Association : subject_namespace

Inheritance

• Association
  • DirectionalAssociation

Slots

Name	Cardinality and Range	Description	Inheritance
aggregator_knowledge_source	0..* String		direct
id	1..1 String		direct
subject	1..1 String		direct
original_subject	0..1 String		direct
subject_namespace	0..1 String	The namespace/prefix of the subject entity	direct
subject_category	0..1 String	The category of the subject entity	direct
subject_closure	0..* String	Field containing subject id and the ids of all of it's ancestors	direct
subject_label	0..1 String	The name of the subject entity	direct
subject_closure_label	0..* String	Field containing subject name and the names of all of it's ancestors	direct
predicate	1..1 String		direct
object	1..1 String		direct
original_object	0..1 String		direct
object_namespace	0..1 String	The namespace/prefix of the object entity	direct
object_category	0..1 String	The category of the object entity	direct
object_closure	0..* String	Field containing object id and the ids of all of it's ancestors	direct
object_label	0..1 String	The name of the object entity	direct
object_closure_label	0..* String	Field containing object name and the names of all of it's ancestors	direct
primary_knowledge_source	0..* String		direct
category	0..1 String		direct
negated	0..1 Boolean		direct
provided_by	0..1 String		direct
publications	0..* String		direct
qualifiers	0..* String		direct
frequency_qualifier	0..1 String		direct
has_evidence	0..1 String		direct
onset_qualifier	0..1 String		direct
sex_qualifier	0..1 String		direct
stage_qualifier	0..1 String		direct
pathway	0..1 String		direct
relation	0..1 String		direct
subject_label	0..1 String	The name of the subject entity	direct
subject_namespace	0..1 String	The namespace/prefix of the subject entity	direct
subject_category	0..1 String	The category of the subject entity	direct
subject_closure	0..* String	Field containing subject id and the ids of all of it's ancestors	direct
subject_closure_label	0..* String	Field containing subject name and the names of all of it's ancestors	direct
object_label	0..1 String	The name of the object entity	direct
object_namespace	0..1 String	The namespace/prefix of the object entity	direct
object_category	0..1 String	The category of the object entity	direct
object_closure	0..* String	Field containing object id and the ids of all of it's ancestors	direct
object_closure_label	0..* String	Field containing object name and the names of all of it's ancestors	direct
frequency_qualifier_label	0..1 String	The name of the frequency_qualifier entity	direct
frequency_qualifier_namespace	0..1 String	The namespace/prefix of the frequency_qualifier entity	direct
frequency_qualifier_category	0..1 String	The category of the frequency_qualifier entity	direct
frequency_qualifier_closure	0..* String	Field containing frequency_qualifier id and the ids of all of it's ancestors	direct
frequency_qualifier_closure_label	0..* String	Field containing frequency_qualifier name and the names of all of it's ancest...	direct
onset_qualifier_label	0..1 String	The name of the onset_qualifier entity	direct
onset_qualifier_namespace	0..1 String	The namespace/prefix of the onset_qualifier entity	direct
onset_qualifier_category	0..1 String	The category of the onset_qualifier entity	direct
onset_qualifier_closure	0..* String	Field containing onset_qualifier id and the ids of all of it's ancestors	direct
onset_qualifier_closure_label	0..* String	Field containing onset_qualifier name and the names of all of it's ancestors	direct
sex_qualifier_label	0..1 String	The name of the sex_qualifier entity	direct
sex_qualifier_namespace	0..1 String	The namespace/prefix of the sex_qualifier entity	direct
sex_qualifier_category	0..1 String	The category of the sex_qualifier entity	direct
sex_qualifier_closure	0..* String	Field containing sex_qualifier id and the ids of all of it's ancestors	direct
sex_qualifier_closure_label	0..* String	Field containing sex_qualifier name and the names of all of it's ancestors	direct
stage_qualifier_label	0..1 String	The name of the stage_qualifier entity	direct
stage_qualifier_namespace	0..1 String	The namespace/prefix of the stage_qualifier entity	direct
stage_qualifier_category	0..1 String	The category of the stage_qualifier entity	direct
stage_qualifier_closure	0..* String	Field containing stage_qualifier id and the ids of all of it's ancestors	direct
stage_qualifier_closure_label	0..* String	Field containing stage_qualifier name and the names of all of it's ancestors	direct

Usages

used by	used in	type	used
AssociationResults	items	range	Association

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/monarch/monarch-py

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/monarch/monarch-py/:Association
native	https://w3id.org/monarch/monarch-py/:Association

LinkML Source

Direct

name: Association
from_schema: https://w3id.org/monarch/monarch-py
slots:
- aggregator_knowledge_source
- id
- subject
- original_subject
- subject_namespace
- subject_category
- subject_closure
- subject_label
- subject_closure_label
- predicate
- object
- original_object
- object_namespace
- object_category
- object_closure
- object_label
- object_closure_label
- primary_knowledge_source
- category
- negated
- provided_by
- publications
- qualifiers
- frequency_qualifier
- has_evidence
- onset_qualifier
- sex_qualifier
- stage_qualifier
- pathway
- relation
- subject_label
- subject_namespace
- subject_category
- subject_closure
- subject_closure_label
- object_label
- object_namespace
- object_category
- object_closure
- object_closure_label
- frequency_qualifier_label
- frequency_qualifier_namespace
- frequency_qualifier_category
- frequency_qualifier_closure
- frequency_qualifier_closure_label
- onset_qualifier_label
- onset_qualifier_namespace
- onset_qualifier_category
- onset_qualifier_closure
- onset_qualifier_closure_label
- sex_qualifier_label
- sex_qualifier_namespace
- sex_qualifier_category
- sex_qualifier_closure
- sex_qualifier_closure_label
- stage_qualifier_label
- stage_qualifier_namespace
- stage_qualifier_category
- stage_qualifier_closure
- stage_qualifier_closure_label

Induced

name: Association
from_schema: https://w3id.org/monarch/monarch-py
attributes:
  aggregator_knowledge_source:
    name: aggregator_knowledge_source
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: aggregator_knowledge_source
    owner: Association
    domain_of:
    - Association
    range: string
  id:
    name: id
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    identifier: true
    alias: id
    owner: Association
    domain_of:
    - Association
    - Entity
    - HistoPheno
    - HistoBin
    range: string
    required: true
  subject:
    name: subject
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: subject
    owner: Association
    domain_of:
    - Association
    range: string
    required: true
  original_subject:
    name: original_subject
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: original_subject
    owner: Association
    domain_of:
    - Association
    range: string
  subject_namespace:
    name: subject_namespace
    description: The namespace/prefix of the subject entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: subject_namespace
    owner: Association
    domain_of:
    - Association
    range: string
  subject_category:
    name: subject_category
    description: The category of the subject entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: category
    alias: subject_category
    owner: Association
    domain_of:
    - Association
    range: string
  subject_closure:
    name: subject_closure
    description: Field containing subject id and the ids of all of it's ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: subject_closure
    owner: Association
    domain_of:
    - Association
    range: string
  subject_label:
    name: subject_label
    description: The name of the subject entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: name
    alias: subject_label
    owner: Association
    domain_of:
    - Association
    - AssociationTypeMapping
    range: string
  subject_closure_label:
    name: subject_closure_label
    description: Field containing subject name and the names of all of it's ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: subject_closure_label
    owner: Association
    domain_of:
    - Association
    range: string
  predicate:
    name: predicate
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: false
    alias: predicate
    owner: Association
    domain_of:
    - Association
    range: string
    required: true
  object:
    name: object
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: object
    owner: Association
    domain_of:
    - Association
    range: string
    required: true
  original_object:
    name: original_object
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: original_object
    owner: Association
    domain_of:
    - Association
    range: string
  object_namespace:
    name: object_namespace
    description: The namespace/prefix of the object entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: object_namespace
    owner: Association
    domain_of:
    - Association
    range: string
  object_category:
    name: object_category
    description: The category of the object entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: category
    alias: object_category
    owner: Association
    domain_of:
    - Association
    range: string
  object_closure:
    name: object_closure
    description: Field containing object id and the ids of all of it's ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: object_closure
    owner: Association
    domain_of:
    - Association
    range: string
  object_label:
    name: object_label
    description: The name of the object entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: name
    alias: object_label
    owner: Association
    domain_of:
    - Association
    - AssociationTypeMapping
    range: string
  object_closure_label:
    name: object_closure_label
    description: Field containing object name and the names of all of it's ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: object_closure_label
    owner: Association
    domain_of:
    - Association
    range: string
  primary_knowledge_source:
    name: primary_knowledge_source
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: primary_knowledge_source
    owner: Association
    domain_of:
    - Association
    range: string
  category:
    name: category
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: false
    alias: category
    owner: Association
    domain_of:
    - Association
    - AssociationCount
    - AssociationTypeMapping
    - Entity
    range: string
  negated:
    name: negated
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: negated
    owner: Association
    domain_of:
    - Association
    range: boolean
  provided_by:
    name: provided_by
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: provided_by
    owner: Association
    domain_of:
    - Association
    - Entity
    range: string
  publications:
    name: publications
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: publications
    owner: Association
    domain_of:
    - Association
    range: string
  qualifiers:
    name: qualifiers
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: qualifiers
    owner: Association
    domain_of:
    - Association
    range: string
  frequency_qualifier:
    name: frequency_qualifier
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: frequency_qualifier
    owner: Association
    domain_of:
    - Association
    range: string
  has_evidence:
    name: has_evidence
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: has_evidence
    owner: Association
    domain_of:
    - Association
    range: string
  onset_qualifier:
    name: onset_qualifier
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: onset_qualifier
    owner: Association
    domain_of:
    - Association
    range: string
  sex_qualifier:
    name: sex_qualifier
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: sex_qualifier
    owner: Association
    domain_of:
    - Association
    range: string
  stage_qualifier:
    name: stage_qualifier
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: stage_qualifier
    owner: Association
    domain_of:
    - Association
    range: string
  pathway:
    name: pathway
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: pathway
    owner: Association
    domain_of:
    - Association
    range: string
  relation:
    name: relation
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: relation
    owner: Association
    domain_of:
    - Association
    range: string
  frequency_qualifier_label:
    name: frequency_qualifier_label
    description: The name of the frequency_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: name
    alias: frequency_qualifier_label
    owner: Association
    domain_of:
    - Association
    range: string
  frequency_qualifier_namespace:
    name: frequency_qualifier_namespace
    description: The namespace/prefix of the frequency_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: frequency_qualifier_namespace
    owner: Association
    domain_of:
    - Association
    range: string
  frequency_qualifier_category:
    name: frequency_qualifier_category
    description: The category of the frequency_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: category
    alias: frequency_qualifier_category
    owner: Association
    domain_of:
    - Association
    range: string
  frequency_qualifier_closure:
    name: frequency_qualifier_closure
    description: Field containing frequency_qualifier id and the ids of all of it's
      ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: frequency_qualifier_closure
    owner: Association
    domain_of:
    - Association
    range: string
  frequency_qualifier_closure_label:
    name: frequency_qualifier_closure_label
    description: Field containing frequency_qualifier name and the names of all of
      it's ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: frequency_qualifier_closure_label
    owner: Association
    domain_of:
    - Association
    range: string
  onset_qualifier_label:
    name: onset_qualifier_label
    description: The name of the onset_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: name
    alias: onset_qualifier_label
    owner: Association
    domain_of:
    - Association
    range: string
  onset_qualifier_namespace:
    name: onset_qualifier_namespace
    description: The namespace/prefix of the onset_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: onset_qualifier_namespace
    owner: Association
    domain_of:
    - Association
    range: string
  onset_qualifier_category:
    name: onset_qualifier_category
    description: The category of the onset_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: category
    alias: onset_qualifier_category
    owner: Association
    domain_of:
    - Association
    range: string
  onset_qualifier_closure:
    name: onset_qualifier_closure
    description: Field containing onset_qualifier id and the ids of all of it's ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: onset_qualifier_closure
    owner: Association
    domain_of:
    - Association
    range: string
  onset_qualifier_closure_label:
    name: onset_qualifier_closure_label
    description: Field containing onset_qualifier name and the names of all of it's
      ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: onset_qualifier_closure_label
    owner: Association
    domain_of:
    - Association
    range: string
  sex_qualifier_label:
    name: sex_qualifier_label
    description: The name of the sex_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: name
    alias: sex_qualifier_label
    owner: Association
    domain_of:
    - Association
    range: string
  sex_qualifier_namespace:
    name: sex_qualifier_namespace
    description: The namespace/prefix of the sex_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: sex_qualifier_namespace
    owner: Association
    domain_of:
    - Association
    range: string
  sex_qualifier_category:
    name: sex_qualifier_category
    description: The category of the sex_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: category
    alias: sex_qualifier_category
    owner: Association
    domain_of:
    - Association
    range: string
  sex_qualifier_closure:
    name: sex_qualifier_closure
    description: Field containing sex_qualifier id and the ids of all of it's ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: sex_qualifier_closure
    owner: Association
    domain_of:
    - Association
    range: string
  sex_qualifier_closure_label:
    name: sex_qualifier_closure_label
    description: Field containing sex_qualifier name and the names of all of it's
      ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: sex_qualifier_closure_label
    owner: Association
    domain_of:
    - Association
    range: string
  stage_qualifier_label:
    name: stage_qualifier_label
    description: The name of the stage_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: name
    alias: stage_qualifier_label
    owner: Association
    domain_of:
    - Association
    range: string
  stage_qualifier_namespace:
    name: stage_qualifier_namespace
    description: The namespace/prefix of the stage_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    alias: stage_qualifier_namespace
    owner: Association
    domain_of:
    - Association
    range: string
  stage_qualifier_category:
    name: stage_qualifier_category
    description: The category of the stage_qualifier entity
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    is_a: category
    alias: stage_qualifier_category
    owner: Association
    domain_of:
    - Association
    range: string
  stage_qualifier_closure:
    name: stage_qualifier_closure
    description: Field containing stage_qualifier id and the ids of all of it's ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: stage_qualifier_closure
    owner: Association
    domain_of:
    - Association
    range: string
  stage_qualifier_closure_label:
    name: stage_qualifier_closure_label
    description: Field containing stage_qualifier name and the names of all of it's
      ancestors
    from_schema: https://w3id.org/monarch/monarch-py
    rank: 1000
    multivalued: true
    alias: stage_qualifier_closure_label
    owner: Association
    domain_of:
    - Association
    range: string