monarch-py

Data models for the Monarch Initiative data access library

URI: https://w3id.org/monarch/monarch-py

Name: monarch-py

Classes

Class	Description
Association	None
DirectionalAssociation	An association that gives it's direction relative to a specified entity
AssociationCountList	Container class for a list of association counts
AssociationTypeMapping	A data class to hold the necessary information to produce association type counts for given entities with appropriate directional labels
Entity	Represents an Entity in the Monarch KG data model
Node	UI conatiner class extending Entity with additional information
SearchResult	None
FacetField	None
FacetValue	None
AssociationCount	None
HistoBin	None
HistoPheno	None
NodeHierarchy	None
Results	None
AssociationResults	None
AssociationTableResults	None
EntityResults	None
SearchResults	None

Slots

Slot	Description
aggregator_knowledge_source
association_counts
category
count	count of documents
description
direction	The directionality of the association relative to a given entity for an assoc...
equivalent_classes
facet_fields	Collection of facet field responses with the field values and counts
facet_queries	Collection of facet query responses with the query string values and counts
facet_values	Collection of FacetValue label/value instances belonging to a FacetField
frequency_qualifier
frequency_qualifier_category	The category of the frequency_qualifier entity
frequency_qualifier_closure	Field containing frequency_qualifier id and the ids of all of it's ancestors
frequency_qualifier_closure_label	Field containing frequency_qualifier name and the names of all of it's ancest...
frequency_qualifier_label	The name of the frequency_qualifier entity
frequency_qualifier_namespace	The namespace/prefix of the frequency_qualifier entity
has_evidence
highlight	matching text snippet containing html tags
id
in_taxon	The biolink taxon that the entity is in the closure of
in_taxon_label	The label of the biolink taxon that the entity is in the closure of
inheritance
items	A collection of items, with the type to be overriden by slot_usage
knowledge_source
label
limit	number of items to return in a response
name
negated
node_hierarchy
object
object_category	The category of the object entity
object_closure	Field containing object id and the ids of all of it's ancestors
object_closure_label	Field containing object name and the names of all of it's ancestors
object_label	The name of the object entity
object_namespace	The namespace/prefix of the object entity
offset	offset into the total number of items
onset_qualifier
onset_qualifier_category	The category of the onset_qualifier entity
onset_qualifier_closure	Field containing onset_qualifier id and the ids of all of it's ancestors
onset_qualifier_closure_label	Field containing onset_qualifier name and the names of all of it's ancestors
onset_qualifier_label	The name of the onset_qualifier entity
onset_qualifier_namespace	The namespace/prefix of the onset_qualifier entity
original_object
original_subject
pathway
predicate
primary_knowledge_source
provided_by
publications
qualifiers
relation
score
sex_qualifier
sex_qualifier_category	The category of the sex_qualifier entity
sex_qualifier_closure	Field containing sex_qualifier id and the ids of all of it's ancestors
sex_qualifier_closure_label	Field containing sex_qualifier name and the names of all of it's ancestors
sex_qualifier_label	The name of the sex_qualifier entity
sex_qualifier_namespace	The namespace/prefix of the sex_qualifier entity
stage_qualifier
stage_qualifier_category	The category of the stage_qualifier entity
stage_qualifier_closure	Field containing stage_qualifier id and the ids of all of it's ancestors
stage_qualifier_closure_label	Field containing stage_qualifier name and the names of all of it's ancestors
stage_qualifier_label	The name of the stage_qualifier entity
stage_qualifier_namespace	The namespace/prefix of the stage_qualifier entity
sub_classes
subject
subject_category	The category of the subject entity
subject_closure	Field containing subject id and the ids of all of it's ancestors
subject_closure_label	Field containing subject name and the names of all of it's ancestors
subject_label	The name of the subject entity
subject_namespace	The namespace/prefix of the subject entity
super_classes
symbol
symmetric	Whether the association type is symmetric, i
synonym
total	total number of items matching a query
xref

Enumerations

Enumeration	Description
AssociationDirectionEnum	The directionality of an association as it relates to a specified entity, wit...

Types

Type	Description
Boolean	A binary (true or false) value
Curie	a compact URI
Date	a date (year, month and day) in an idealized calendar
DateOrDatetime	Either a date or a datetime
Datetime	The combination of a date and time
Decimal	A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double	A real number that conforms to the xsd:double specification
Float	A real number that conforms to the xsd:float specification
Integer	An integer
Ncname	Prefix part of CURIE
Nodeidentifier	A URI, CURIE or BNODE that represents a node in a model
Objectidentifier	A URI or CURIE that represents an object in the model
String	A character string
Time	A time object represents a (local) time of day, independent of any particular...
Uri	a complete URI
Uriorcurie	a URI or a CURIE

Subsets

Subset	Description