Skip to content

Class: Chemical

A substance that has a defined molecular structure and is produced by or used in a chemical process. Includes drugs used as part of medical actions. For example: corticosteroid, folic acid, opioid analgesic

URI: maxo_extract:Chemical

erDiagram Chemical { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
MaxoAnnotations chemicals range Chemical
ActionAnnotationRelationship subject_extension range Chemical

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • CHEBI

Annotations

property value
annotators sqlite:obo:chebi, sqlite:obo:ncit

Schema Source

  • from schema: http://w3id.org/ontogpt/maxo

Mappings

Mapping Type Mapped Value
self maxo_extract:Chemical
native maxo_extract:Chemical

LinkML Source

Direct

name: Chemical
id_prefixes:
- CHEBI
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:chebi, sqlite:obo:ncit
description: 'A substance that has a defined molecular structure and is produced by
  or used in a chemical process. Includes drugs used as part of medical actions. For
  example: corticosteroid, folic acid, opioid analgesic'
from_schema: http://w3id.org/ontogpt/maxo
is_a: NamedEntity

Induced

name: Chemical
id_prefixes:
- CHEBI
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:chebi, sqlite:obo:ncit
description: 'A substance that has a defined molecular structure and is produced by
  or used in a chemical process. Includes drugs used as part of medical actions. For
  example: corticosteroid, folic acid, opioid analgesic'
from_schema: http://w3id.org/ontogpt/maxo
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/maxo
    rank: 1000
    identifier: true
    alias: id
    owner: Chemical
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/maxo
    aliases:
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: Chemical
    domain_of:
    - NamedEntity
    range: string