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Template for Medical Action Extraction

A template for extracting relationships relevant to the MAXO medical action ontology.

URI: http://w3id.org/ontogpt/maxo

Name: maxo

Schema Diagram

erDiagram MaxoAnnotations { } Triple { string qualifier } NamedEntity { string id string label } RelationshipType { string id string label } Publication { string id string title string abstract string combined_text string full_text } ActionToSymptomRelationship { string qualifier } Symptom { string id string label } Action { string id string label } ActionToDiseaseRelationship { string qualifier } Disease { string id string label } MaxoAnnotations ||--}o Action : "action" MaxoAnnotations ||--}o Disease : "disease" MaxoAnnotations ||--}o Symptom : "symptom" MaxoAnnotations ||--}o ActionToDiseaseRelationship : "action_to_disease" MaxoAnnotations ||--}o ActionToSymptomRelationship : "action_to_symptom" MaxoAnnotations ||--|o Publication : "publication" MaxoAnnotations ||--}o Triple : "triples" Triple ||--|o NamedEntity : "subject" Triple ||--|o RelationshipType : "predicate" Triple ||--|o NamedEntity : "object" Triple ||--|o NamedEntity : "subject_qualifier" Triple ||--|o NamedEntity : "object_qualifier" ActionToSymptomRelationship ||--|o Action : "subject" ActionToSymptomRelationship ||--|o NamedEntity : "predicate" ActionToSymptomRelationship ||--}o Symptom : "object" ActionToSymptomRelationship ||--|o NamedEntity : "subject_qualifier" ActionToSymptomRelationship ||--|o NamedEntity : "object_qualifier" ActionToDiseaseRelationship ||--|o Action : "subject" ActionToDiseaseRelationship ||--|o NamedEntity : "predicate" ActionToDiseaseRelationship ||--}o Disease : "object" ActionToDiseaseRelationship ||--|o NamedEntity : "subject_qualifier" ActionToDiseaseRelationship ||--|o NamedEntity : "object_qualifier"

Classes

Class Description
AnnotatorResult None
Any None
CompoundExpression None
        Triple Abstract parent for Relation Extraction tasks
                ActionToDiseaseRelationship A triple representing a relationship between a medical action (A clinically prescribed procedure, therapy, intervention, or recommendation) and a disease, for example, radiation therapy TREATS cancer, or PET scan IS USED TO DIAGNOSE myocarditis.
                ActionToSymptomRelationship A triple representing a relationship between a medical action (A clinically prescribed procedure, therapy, intervention, or recommendation) and a symptom, for example, a chest X-ray IS USED TO DIAGNOSE pleural effusion.
ExtractionResult A result of extracting knowledge on text
NamedEntity None
        Action A clinically prescribed procedure, therapy, intervention, or recommendation.
        Disease A disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism.
        RelationshipType None
        Symptom A condition or phenotype resulting from an abnormal health state.
Publication None
TextWithEntity A text containing one or more instances of a single type of entity.
TextWithTriples A text containing one or more relations of the Triple type.
        MaxoAnnotations None

Slots

Slot Description
abstract The abstract of the publication
action Semicolon-separated list of medical actions
action_to_disease
action_to_symptom
combined_text
disease Semicolon-separated list of diseases
entities
extracted_object The complex objects extracted from the text
full_text The full text of the publication
id A unique identifier for the named entity
input_id
input_text
input_title
label The label (name) of the named thing
named_entities Named entities extracted from the text
object
object_id
object_qualifier An optional qualifier or modifier for the object of the statement, e
object_text
predicate
prompt
publication
qualifier A qualifier for the statements, e
raw_completion_output
subject
subject_qualifier An optional qualifier or modifier for the subject of the statement, e
subject_text
symptom Semicolon-separated list of symptoms
title The title of the publication
triples

Enumerations

Enumeration Description
NullDataOptions

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description