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Class: ChemicalEntity

URI: reaction:ChemicalEntity

erDiagram ChemicalEntity { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
Reaction left_side range ChemicalEntity
Reaction right_side range ChemicalEntity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • CHEBI

Annotations

property value
annotators sqlite:obo:chebi

Schema Source

  • from schema: https://w3id.org/ontogpt/reaction

Mappings

Mapping Type Mapped Value
self reaction:ChemicalEntity
native reaction:ChemicalEntity

LinkML Source

Direct

name: ChemicalEntity
id_prefixes:
- CHEBI
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:chebi
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity

Induced

name: ChemicalEntity
id_prefixes:
- CHEBI
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:chebi
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    identifier: true
    alias: id
    owner: ChemicalEntity
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: https://w3id.org/ontogpt/reaction
    aliases:
    - name
    slot_uri: rdfs:label
    alias: label
    owner: ChemicalEntity
    domain_of:
    - Reaction
    - NamedEntity
    range: string