Class: Gene

erDiagram Gene { string id string label }

Inheritance

NamedEntity
- Gene

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 String	A unique identifier for the named entity	NamedEntity
label	0..1 String	The label (name) of the named thing	NamedEntity

Usages

used by	used in	type	used
GeneToReaction	gene	range	Gene
ReactionDocument	genes	range	Gene
GeneReactionPairing	gene	range	Gene

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

HGNC

Annotations

property	value
annotators	gilda:, bioportal:hgnc-nr, bioportal:pr

Schema Source

from schema: https://w3id.org/ontogpt/reaction

Mappings

Mapping Type	Mapped Value
self	reaction:Gene
native	reaction:Gene

LinkML Source

Direct

name: Gene
id_prefixes:
- HGNC
annotations:
  annotators:
    tag: annotators
    value: gilda:, bioportal:hgnc-nr, bioportal:pr
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity

Induced

name: Gene
id_prefixes:
- HGNC
annotations:
  annotators:
    tag: annotators
    value: gilda:, bioportal:hgnc-nr, bioportal:pr
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    identifier: true
    alias: id
    owner: Gene
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: https://w3id.org/ontogpt/reaction
    aliases:
    - name
    slot_uri: rdfs:label
    alias: label
    owner: Gene
    domain_of:
    - Reaction
    - NamedEntity
    range: string