Class: Organism

erDiagram Organism { string id string label }

Inheritance

NamedEntity
- Organism

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 String	A unique identifier for the named entity	NamedEntity
label	0..1 String	The label (name) of the named thing	NamedEntity

Usages

used by	used in	type	used
GeneToReaction	organism	range	Organism
ReactionDocument	organism	range	Organism

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

NCBITaxon

Annotations

property	value
annotators	gilda:, sqlite:obo:ncbitaxon

Schema Source

from schema: https://w3id.org/ontogpt/reaction

Mappings

Mapping Type	Mapped Value
self	reaction:Organism
native	reaction:Organism

LinkML Source

Direct

name: Organism
id_prefixes:
- NCBITaxon
annotations:
  annotators:
    tag: annotators
    value: gilda:, sqlite:obo:ncbitaxon
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity

Induced

name: Organism
id_prefixes:
- NCBITaxon
annotations:
  annotators:
    tag: annotators
    value: gilda:, sqlite:obo:ncbitaxon
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    identifier: true
    alias: id
    owner: Organism
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: https://w3id.org/ontogpt/reaction
    aliases:
    - name
    slot_uri: rdfs:label
    alias: label
    owner: Organism
    domain_of:
    - Reaction
    - NamedEntity
    range: string