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Class: Reaction

URI: reaction:Reaction

ReactionstringlabelstringdescriptionstringListsynonymsstringidChemicalEntitystringidstringlabelReactionGroupingstringidstringlabelsubclass_ofleft_sideright_side

Inheritance

Slots

Name Cardinality and Range Description Inheritance
label 0..1
String
the name of the reaction direct
description 0..1
String
a textual description of the reaction direct
synonyms *
String
alternative names of the reaction direct
subclass_of 0..1
ReactionGrouping
the category to which this biological process belongs direct
left_side *
ChemicalEntity
semicolon separated list of chemical entities on the left side direct
right_side *
ChemicalEntity
semicolon separated list of chemical entities on the right side direct
id 1
String
A unique identifier for the named entity NamedEntity

Usages

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/ontogpt/reaction

Mappings

Mapping Type Mapped Value
self reaction:Reaction
native reaction:Reaction

LinkML Source

Direct

name: Reaction
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity
attributes:
  label:
    name: label
    description: the name of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    - NamedEntity
  description:
    name: description
    description: a textual description of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
  synonyms:
    name: synonyms
    description: alternative names of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    multivalued: true
  subclass_of:
    name: subclass_of
    description: the category to which this biological process belongs
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    range: ReactionGrouping
  left_side:
    name: left_side
    description: semicolon separated list of chemical entities on the left side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    range: ChemicalEntity
    multivalued: true
  right_side:
    name: right_side
    description: semicolon separated list of chemical entities on the right side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    range: ChemicalEntity
    multivalued: true
tree_root: true

Induced

name: Reaction
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity
attributes:
  label:
    name: label
    description: the name of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: label
    owner: Reaction
    domain_of:
    - Reaction
    - NamedEntity
    range: string
  description:
    name: description
    description: a textual description of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: description
    owner: Reaction
    domain_of:
    - Reaction
    range: string
  synonyms:
    name: synonyms
    description: alternative names of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: synonyms
    owner: Reaction
    domain_of:
    - Reaction
    range: string
    multivalued: true
  subclass_of:
    name: subclass_of
    description: the category to which this biological process belongs
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: subclass_of
    owner: Reaction
    domain_of:
    - Reaction
    range: ReactionGrouping
  left_side:
    name: left_side
    description: semicolon separated list of chemical entities on the left side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: left_side
    owner: Reaction
    domain_of:
    - Reaction
    range: ChemicalEntity
    multivalued: true
  right_side:
    name: right_side
    description: semicolon separated list of chemical entities on the right side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: right_side
    owner: Reaction
    domain_of:
    - Reaction
    range: ChemicalEntity
    multivalued: true
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    identifier: true
    alias: id
    owner: Reaction
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
tree_root: true