Class: Reaction

URI: reaction:Reaction

erDiagram Reaction { string label string description stringList synonyms string id } ChemicalEntity { string id string label } ReactionGrouping { string id string label } Reaction ||--|o ReactionGrouping : "subclass_of" Reaction ||--}o ChemicalEntity : "left_side" Reaction ||--}o ChemicalEntity : "right_side"

Inheritance

NamedEntity
- Reaction

Slots

Name	Cardinality and Range	Description	Inheritance
label	0..1 String	the name of the reaction	direct
description	0..1 String	a textual description of the reaction	direct
synonyms	* String	alternative names of the reaction	direct
subclass_of	0..1 ReactionGrouping	the category to which this biological process belongs	direct
left_side	* ChemicalEntity	semicolon separated list of chemical entities on the left side	direct
right_side	* ChemicalEntity	semicolon separated list of chemical entities on the right side	direct
id	1 String	A unique identifier for the named entity	NamedEntity

Usages

used by	used in	type	used
GeneToReaction	reactions	range	Reaction
ReactionDocument	reactions	range	Reaction
GeneReactionPairing	reaction	range	Reaction

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/ontogpt/reaction

Mappings

Mapping Type	Mapped Value
self	reaction:Reaction
native	reaction:Reaction

LinkML Source

Direct

name: Reaction
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity
attributes:
  label:
    name: label
    description: the name of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    - NamedEntity
  description:
    name: description
    description: a textual description of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
  synonyms:
    name: synonyms
    description: alternative names of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    multivalued: true
  subclass_of:
    name: subclass_of
    description: the category to which this biological process belongs
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    range: ReactionGrouping
  left_side:
    name: left_side
    description: semicolon separated list of chemical entities on the left side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    range: ChemicalEntity
    multivalued: true
  right_side:
    name: right_side
    description: semicolon separated list of chemical entities on the right side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - Reaction
    range: ChemicalEntity
    multivalued: true
tree_root: true

Induced

name: Reaction
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity
attributes:
  label:
    name: label
    description: the name of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: label
    owner: Reaction
    domain_of:
    - Reaction
    - NamedEntity
    range: string
  description:
    name: description
    description: a textual description of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: description
    owner: Reaction
    domain_of:
    - Reaction
    range: string
  synonyms:
    name: synonyms
    description: alternative names of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: synonyms
    owner: Reaction
    domain_of:
    - Reaction
    range: string
    multivalued: true
  subclass_of:
    name: subclass_of
    description: the category to which this biological process belongs
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: subclass_of
    owner: Reaction
    domain_of:
    - Reaction
    range: ReactionGrouping
  left_side:
    name: left_side
    description: semicolon separated list of chemical entities on the left side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: left_side
    owner: Reaction
    domain_of:
    - Reaction
    range: ChemicalEntity
    multivalued: true
  right_side:
    name: right_side
    description: semicolon separated list of chemical entities on the right side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: right_side
    owner: Reaction
    domain_of:
    - Reaction
    range: ChemicalEntity
    multivalued: true
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    identifier: true
    alias: id
    owner: Reaction
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
tree_root: true