Index

A

ancestor_generator() (in module ontorunner.post.util)

C

consolidate_rows() (in module ontorunner.post.util)

E

explode_df() (in module ontorunner.spacy_module)

export_tsv() (in module ontorunner.spacy_module) extract_termlist_info() (ontorunner.pipes.OntoRuler.OntoRuler method)

F

filter_synonyms() (in module ontorunner.post.util)

find_extensions() (in module ontorunner.post.add_sentence)

G

get_ancestors() (in module ontorunner.post.util) get_column_doc_ratio() (in module ontorunner.post.util) get_knowledge_base_enitities() (in module ontorunner.spacy_module)

get_match_type() (in module ontorunner.post.add_sentence) get_ont_terms_df() (ontorunner.pipes.OntoRuler.OntoRuler method) get_terms_patterns() (ontorunner.pipes.OntoRuler.OntoRuler method) get_token_info() (in module ontorunner.spacy_module)

H

has_curies() (ontorunner.pipes.OntoRuler.OntoRuler method)

J

json2tsv() (in module ontorunner.pre.util)

M

module ontorunner ontorunner.converters ontorunner.converters.biohub_converter ontorunner.oger_module ontorunner.pipes ontorunner.pipes.OntoRuler ontorunner.post ontorunner.post.add_sentence ontorunner.post.util ontorunner.pre ontorunner.pre.util ontorunner.spacy_module

O

onto_tokenize() (in module ontorunner.spacy_module) OntoRuler (class in ontorunner.pipes.OntoRuler) ontorunner module ontorunner.converters module ontorunner.converters.biohub_converter module ontorunner.oger_module module ontorunner.pipes module ontorunner.pipes.OntoRuler module

ontorunner.post module ontorunner.post.add_sentence module ontorunner.post.util module ontorunner.pre module ontorunner.pre.util module ontorunner.spacy_module module

P

parse() (in module ontorunner.converters.biohub_converter) (in module ontorunner.post.add_sentence)

parse_header() (in module ontorunner.converters.biohub_converter) prepare_termlist() (in module ontorunner.pre.util)

R

run_oger() (in module ontorunner.oger_module)

run_spacy() (in module ontorunner.spacy_module) run_viz() (in module ontorunner.spacy_module)

S

sentencify() (in module ontorunner.post.add_sentence)

W

write_line() (in module ontorunner.converters.biohub_converter)