Welcome to ontoRunNER’s documentation!

Contents:

• ontoRunNER
  • Setup
    • For developers
    • For users
  • Ontology to KGX TSV
    • CLI
    • Python
  • Preparing term-list
    • CLI
    • Python
  • Running OGER.
    • CLI
    • Running OGER using a ‘settings.ini’ file
    • CLI
    • Python
  • Running spaCy.
    • CLI
    • Python
  • Visualization using spaCy.displaCy.
    • CLI
    • Python
    • Dependency display using displaCy.
    • Entity display using displaCy.
• Code
  • ontorunner package
    • Subpackages
    • Submodules
    • ontorunner.oger_module module
    • ontorunner.spacy_module module
    • Module contents

Indices and tables

• Index

• Module Index

• Search Page