gpsea.analysis.pscore.stats package
- class gpsea.analysis.pscore.stats.PhenotypeScoreStatistic[source]
Bases:
object
PhenotypeScoreStatistic calculates a p value for 2 or more phenotype score groups computed by a
PhenotypeScorer
.
- class gpsea.analysis.pscore.stats.MannWhitneyStatistic[source]
Bases:
PhenotypeScoreStatistic
MannWhitneyStatistic is a wrapper around SciPy’s
mannwhitneyu()
function to apply Mann-Whitney U rank test on 2 phenotype scores.See Phenotype score for an example usage.
- class gpsea.analysis.pscore.stats.TTestStatistic[source]
Bases:
PhenotypeScoreStatistic
TTestStatistic is a wrapper around SciPy’s
ttest_ind()
function to apply T test on 2 phenotype scores.