monarch-ingest
Details
| GitHub | monarch-initiative/monarch-ingest |
| Language | Python |
| Description | Data ingest application for Monarch Initiative knowledge graph using Koza |
Dependencies
External Dependencies
| Package | Version |
|---|---|
| python | >=3.10,<3.12 |
| biolink-model | ^3.6 |
| bmt | ^1.0.15 |
| cat-merge | >=0.2.0 |
| closurizer | 0.5.1 |
| kghub-downloader | ^0.3.2 |
| kgx | {'git': 'https://github.com/biolink/kgx', 'branch': 'master'} |
| koza | >=0.5.2 |
| linkml | ^1.6.3 |
| linkml-runtime | 1.6.2 |
| linkml-solr | 0.1.5 |
| multi-indexer | 0.0.5 |
| botocore | ^1.31 |
| importlib-metadata | >=4.6.1 |
| loguru | * |
| pydantic | ^2.5 |
| sh | ^1.14.3 |
| typer | ^0.7 |
| typer-cli | ^0.0.13 |
Documentation
monarch_ingest
Monarch Ingest is a data-ingest application for Monarch Initiative using Koza.