General HPO terms
Our heuristic for avoiding unnecessary statistical tests (See Multiple-testing correction) skips HPO terms that are unlikely to lead to interesting results on statistical testing. This is a domain judgment rather than a statistical one. The HPO is hierarchically arranged from general to specific, and the more specific a term is, the more interest we deem a significant genotype phenotype correlation to be. Therefore, we decide not to test terms such as Abnormality of the endocrine system (HP:0000818). The top-level term Phenotypic abnormality (HP:0000118) is the root of all phenotypic abnormality terms, and we refer to the children of this term as level 1.
Most of the HPO is arranged according to morphological abnormalities (a structural abnormality) and physiological abnormalities. Therefore, the above term has the children Abnormal endocrine physiology (HP:0031072) and Abnormal endocrine morphology (HP:0031071). We consider these terms to be uninteresting for the same reason - they are too general to bring much medical insight, and we expect that if there is a signal it will usually be driven by one or more specific terms. We call these terms level 2.
Many but not all terms on level 3 are also “general” in this sense,
e.g., Abnormality of the parathyroid gland (HP:0000828).
We also skip such level 3 terms. Our HPO MTC filter for identifying these terms is to search the primary label for the word
'Abnormal'
, and remove all terms that start with this string.
According to the HPO MTC filter strategy (see Multiple-testing correction), we stop at level 3, because the terms at lower levels are more likely to be specific, even if they contain the word “Abnormal” or “Abnormality” in their label. Users can adapt the procedure if desired.
The following table shows a list of HPO terms that are removed from consideration by the HPO MTC filter strategy.
level |
Term Id |
Label |
---|---|---|
level 1 |
HP:0002664 |
Neoplasm |
level 1 |
HP:0001574 |
Abnormality of the integument |
level 1 |
HP:0040064 |
Abnormality of limbs |
level 1 |
HP:0001871 |
Abnormality of blood and blood-forming tissues |
level 1 |
HP:0000598 |
Abnormality of the ear |
level 1 |
HP:0001197 |
Abnormality of prenatal development or birth |
level 1 |
HP:0000818 |
Abnormality of the endocrine system |
level 1 |
HP:0000119 |
Abnormality of the genitourinary system |
level 1 |
HP:0045027 |
Abnormality of the thoracic cavity |
level 1 |
HP:0000478 |
Abnormality of the eye |
level 1 |
HP:0025142 |
Constitutional symptom |
level 1 |
HP:0000707 |
Abnormality of the nervous system |
level 1 |
HP:0033127 |
Abnormality of the musculoskeletal system |
level 1 |
HP:0001939 |
Abnormality of metabolism/homeostasis |
level 1 |
HP:0025354 |
Abnormal cellular phenotype |
level 1 |
HP:0002086 |
Abnormality of the respiratory system |
level 1 |
HP:0000152 |
Abnormality of head or neck |
level 1 |
HP:0001507 |
Growth abnormality |
level 1 |
HP:0000769 |
Abnormality of the breast |
level 1 |
HP:0002715 |
Abnormality of the immune system |
level 1 |
HP:0001608 |
Abnormality of the voice |
level 1 |
HP:0001626 |
Abnormality of the cardiovascular system |
level 1 |
HP:0025031 |
Abnormality of the digestive system |
level 2 |
HP:0031094 |
Abnormal breast physiology |
level 2 |
HP:0045026 |
Abnormal mediastinum morphology |
level 2 |
HP:0011025 |
Abnormal cardiovascular system physiology |
level 2 |
HP:0032180 |
Abnormal circulating metabolite concentration |
level 2 |
HP:0032245 |
Abnormal metabolism |
level 2 |
HP:0012372 |
Abnormal eye morphology |
level 2 |
HP:0025461 |
Abnormal cell morphology |
level 2 |
HP:0000002 |
Abnormality of body height |
level 2 |
HP:0003110 |
Abnormality of urine homeostasis |
level 2 |
HP:0001892 |
Abnormal bleeding |
level 2 |
HP:0012093 |
Abnormality of endocrine pancreas physiology |
level 2 |
HP:0000777 |
Abnormal thymus morphology |
level 2 |
HP:3000013 |
Abnormal platysma muscle morphology |
level 2 |
HP:0032251 |
Abnormal immune system morphology |
level 2 |
HP:0000079 |
Abnormality of the urinary system |
level 2 |
HP:0012680 |
Abnormality of the pineal gland |
level 2 |
HP:0030680 |
Abnormal cardiovascular system morphology |
level 2 |
HP:0000847 |
Abnormality of renin-angiotensin system |
level 2 |
HP:0025429 |
Abnormal cry |
level 2 |
HP:0002597 |
Abnormality of the vasculature |
level 2 |
HP:0025454 |
Abnormal CSF metabolite concentration |
level 2 |
HP:0005561 |
Abnormal bone marrow cell morphology |
level 2 |
HP:0025456 |
Abnormal CSF protein concentration |
level 2 |
HP:0003549 |
Abnormality of connective tissue |
level 2 |
HP:0011843 |
Abnormal musculoskeletal physiology |
level 2 |
HP:0032243 |
Abnormal tissue metabolite concentration |
level 2 |
HP:0003011 |
Abnormality of the musculature |
level 2 |
HP:0012639 |
Abnormal nervous system morphology |
level 2 |
HP:0031704 |
Abnormal ear physiology |
level 2 |
HP:0002814 |
Abnormality of the lower limb |
level 2 |
HP:0000834 |
Abnormality of the adrenal glands |
level 2 |
HP:0004323 |
Abnormality of body weight |
level 2 |
HP:0000828 |
Abnormality of the parathyroid gland |
level 2 |
HP:0020169 |
Abnormal drug response |
level 2 |
HP:0033796 |
Abnormal leukocyte physiology |
level 2 |
HP:0000078 |
Abnormality of the genital system |
level 2 |
HP:0001928 |
Abnormality of coagulation |
level 2 |
HP:0031072 |
Abnormal endocrine physiology |
level 2 |
HP:0000234 |
Abnormality of the head |
level 2 |
HP:0025033 |
Abnormal digestive system morphology |
level 2 |
HP:0002012 |
Abnormality of the abdominal organs |
level 2 |
HP:0031550 |
Abnormal flow cytometry test result |
level 2 |
HP:0031093 |
Abnormal breast morphology |
level 2 |
HP:0001787 |
Abnormal delivery |
level 2 |
HP:0031703 |
Abnormal ear morphology |
level 2 |
HP:0031685 |
Abnormal stool composition |
level 2 |
HP:0034684 |
Abnormal enzyme concentration or activity |
level 2 |
HP:0001877 |
Abnormal erythrocyte morphology |
level 2 |
HP:0033334 |
Abnormal embryonic development |
level 2 |
HP:0002795 |
Abnormal respiratory system physiology |
level 2 |
HP:0004378 |
Abnormality of the anus |
level 2 |
HP:0011138 |
Abnormal skin adnexa morphology |
level 2 |
HP:0003117 |
Abnormal circulating hormone concentration |
level 2 |
HP:0025021 |
Abnormal erythrocyte sedimentation rate |
level 2 |
HP:0001872 |
Abnormality of thrombocytes |
level 2 |
HP:0020054 |
Abnormal erythrocyte physiology |
level 2 |
HP:0001438 |
Abnormal abdomen morphology |
level 2 |
HP:0001977 |
Abnormal thrombosis |
level 2 |
HP:0000924 |
Abnormality of the skeletal system |
level 2 |
HP:0100763 |
Abnormality of the lymphatic system |
level 2 |
HP:0000951 |
Abnormality of the skin |
level 2 |
HP:0025032 |
Abnormality of digestive system physiology |
level 2 |
HP:0000820 |
Abnormality of the thyroid gland |
level 2 |
HP:0012029 |
Abnormal urine hormone level |
level 2 |
HP:0033012 |
Abnormal salivary metabolite concentration |
level 2 |
HP:0000464 |
Abnormality of the neck |
level 2 |
HP:0025276 |
Abnormality of skin adnexa physiology |
level 2 |
HP:0031071 |
Abnormal endocrine morphology |
level 2 |
HP:0001560 |
Abnormality of the amniotic fluid |
level 2 |
HP:0011024 |
Abnormality of the gastrointestinal tract |
level 2 |
HP:0012638 |
Abnormal nervous system physiology |
level 2 |
HP:0000864 |
Abnormality of the hypothalamus-pituitary axis |
level 2 |
HP:0009127 |
Abnormality of the musculature of the limbs |
level 2 |
HP:0410008 |
Abnormality of the peripheral nervous system |
level 2 |
HP:0010932 |
Abnormal circulating nucleobase concentration |
level 2 |
HP:0004298 |
Abnormality of the abdominal wall |
level 2 |
HP:0500015 |
Abnormal cardiac test |
level 2 |
HP:0012337 |
Abnormal homeostasis |
level 2 |
HP:0010978 |
Abnormality of immune system physiology |
level 2 |
HP:0001194 |
Abnormalities of placenta or umbilical cord |
level 2 |
HP:0012373 |
Abnormal eye physiology |
level 2 |
HP:0001881 |
Abnormal leukocyte morphology |
level 2 |
HP:0002817 |
Abnormality of the upper limb |
level 2 |
HP:0040068 |
Abnormality of limb bone |
level 2 |
HP:0011017 |
Abnormal cellular physiology |
level 3 |
HP:0006500 |
Abnormal lower limb epiphysis morphology |
level 3 |
HP:0004337 |
Abnormality of amino acid metabolism |
level 3 |
HP:0031409 |
Abnormal lymphocyte physiology |
level 3 |
HP:0040214 |
Abnormal circulating insulin concentration |
level 3 |
HP:0034251 |
Abnormal corneal reflex |
level 3 |
HP:0012772 |
Abnormal upper to lower segment ratio |
level 3 |
HP:0040231 |
Abnormal onset of bleeding |
level 3 |
HP:0012379 |
Abnormal circulating enzyme concentration or activity |
level 3 |
HP:0030875 |
Abnormality of pulmonary circulation |
level 3 |
HP:0012111 |
Abnormality of circulating glucocorticoid level |
level 3 |
HP:0100491 |
Abnormality of lower limb joint |
level 3 |
HP:0002793 |
Abnormal pattern of respiration |
level 3 |
HP:0012261 |
Abnormal respiratory motile cilium physiology |
level 3 |
HP:0001597 |
Abnormality of the nail |
level 3 |
HP:0010881 |
Abnormality of the umbilical cord |
level 3 |
HP:0025463 |
Abnormality of redox activity |
level 3 |
HP:0010991 |
Abnormal morphology of the abdominal musculature |
level 3 |
HP:0020155 |
Abnormal oocyte morphology |
level 3 |
HP:0010974 |
Abnormal myeloid leukocyte morphology |
level 3 |
HP:0100705 |
Abnormal glial cell morphology |
level 3 |
HP:3000050 |
Abnormal odontoid tissue morphology |
level 3 |
HP:6000231 |
Abnormal tissue enzyme concentration or activity |
level 3 |
HP:0002981 |
Abnormality of the calf |
level 3 |
HP:0030956 |
Abnormality of cardiovascular system electrophysiology |
level 3 |
HP:0031884 |
Abnormal CSF glucose concentration |
level 3 |
HP:0430071 |
Abnormal circulating organic compound concentration |
level 3 |
HP:0004352 |
Abnormal circulating purine concentration |
level 3 |
HP:0012103 |
Abnormality of the mitochondrion |
level 3 |
HP:0012614 |
Abnormal urine cytology |
level 3 |
HP:0010969 |
Abnormality of glycolipid metabolism |
level 3 |
HP:0012718 |
Abnormal gastrointestinal tract morphology |
level 3 |
HP:0012700 |
Abnormal large intestine physiology |
level 3 |
HP:0001760 |
Abnormal foot morphology |
level 3 |
HP:0012131 |
Abnormal number of erythroid precursors |
level 3 |
HP:0003839 |
Abnormal upper limb epiphysis morphology |
level 3 |
HP:0010977 |
Abnormal phagocytosis |
level 3 |
HP:0500019 |
Abnormal resting energy expenditure from metabolic cart test |
level 3 |
HP:0004329 |
Abnormal posterior eye segment morphology |
level 3 |
HP:0000539 |
Abnormality of refraction |
level 3 |
HP:0001311 |
Abnormal nervous system electrophysiology |
level 3 |
HP:0006529 |
Abnormal pulmonary lymphatics |
level 3 |
HP:0025668 |
Abnormal neck morphology |
level 3 |
HP:0012654 |
Abnormal CSF dopamine concentration |
level 3 |
HP:0004353 |
Abnormal circulating pyrimidine concentration |
level 3 |
HP:0032367 |
Abnormal growth hormone level |
level 3 |
HP:0031657 |
Abnormal heart sound |
level 3 |
HP:0011409 |
Abnormal placental membrane morphology |
level 3 |
HP:0004371 |
Abnormality of glycosaminoglycan metabolism |
level 3 |
HP:0000080 |
Abnormality of reproductive system physiology |
level 3 |
HP:3000036 |
Abnormal head blood vessel morphology |
level 3 |
HP:0500114 |
Abnormal stool urobilinogen concentration |
level 3 |
HP:0012640 |
Abnormality of intracranial pressure |
level 3 |
HP:0030800 |
Abnormal visual accommodation |
level 3 |
HP:0040085 |
Abnormal circulating aldosterone |
level 3 |
HP:0002926 |
Abnormality of thyroid physiology |
level 3 |
HP:0100016 |
Abnormal mesentery morphology |
level 3 |
HP:0034737 |
Abnormal erythrocyte metabolite concentration |
level 3 |
HP:0012757 |
Abnormal neuron morphology |
level 3 |
HP:0025669 |
Abnormal neck physiology |
level 3 |
HP:0000271 |
Abnormality of the face |
level 3 |
HP:0000777 |
Abnormal thymus morphology |
level 3 |
HP:0034482 |
Abnormal spinal cord physiology |
level 3 |
HP:0011014 |
Abnormal glucose homeostasis |
level 3 |
HP:0011121 |
Abnormal skin morphology |
level 3 |
HP:0100536 |
Abnormality of the fascia |
level 3 |
HP:0031427 |
Abnormal circulating osteocalcin level |
level 3 |
HP:0011032 |
Abnormality of fluid regulation |
level 3 |
HP:0020061 |
Abnormal hemoglobin concentration |
level 3 |
HP:0003220 |
Abnormality of chromosome stability |
level 3 |
HP:0031508 |
Abnormal circulating thyroid hormone concentration |
level 3 |
HP:0020058 |
Abnormal red blood cell count |
level 3 |
HP:0033013 |
Abnormal salivary cortisol level |
level 3 |
HP:0012591 |
Abnormal urinary electrolyte concentration |
level 3 |
HP:0500117 |
Abnormal CSF urate concentration |
level 3 |
HP:0033354 |
Abnormal urine metabolite level |
level 3 |
HP:0003111 |
Abnormal blood ion concentration |
level 3 |
HP:0000370 |
Abnormality of the middle ear |
level 3 |
HP:0000223 |
Abnormality of taste sensation |
level 3 |
HP:0009124 |
Abnormal adipose tissue morphology |
level 3 |
HP:0011277 |
Abnormality of the urinary system physiology |
level 3 |
HP:0031097 |
Abnormal thyroid-stimulating hormone level |
level 3 |
HP:0011869 |
Abnormal platelet function |
level 3 |
HP:0004356 |
Abnormality of lysosomal metabolism |
level 3 |
HP:0033335 |
Abnormal preimplantation embryonic development |
level 3 |
HP:0008047 |
Abnormality of the vasculature of the eye |
level 3 |
HP:0004370 |
Abnormality of temperature regulation |
level 3 |
HP:0011018 |
Abnormality of the cell cycle |
level 3 |
HP:0032314 |
Abnormal areolar morphology |
level 3 |
HP:0033358 |
Abnormal urine osmolality |
level 3 |
HP:0011884 |
Abnormal umbilical stump bleeding |
level 3 |
HP:0012345 |
Abnormal glycosylation |
level 3 |
HP:0500018 |
Abnormal cardiac exercise stress test |
level 3 |
HP:0030860 |
Abnormal CSF amyloid concentration |
level 3 |
HP:0011772 |
Abnormal thyroid morphology |
level 3 |
HP:0011122 |
Abnormality of skin physiology |
level 3 |
HP:0100022 |
Abnormality of movement |
level 3 |
HP:0025015 |
Abnormal vascular morphology |
level 3 |
HP:6000489 |
Abnormal circulating fibroblast growth factor 23 concentration |
level 3 |
HP:0100887 |
Abnormality of globe size |
level 3 |
HP:0011732 |
Abnormal adrenal morphology |
level 3 |
HP:0001155 |
Abnormality of the hand |
level 3 |
HP:0001595 |
Abnormal hair morphology |
level 3 |
HP:0002270 |
Abnormality of the autonomic nervous system |
level 3 |
HP:0011843 |
Abnormal musculoskeletal physiology |
level 3 |
HP:0000929 |
Abnormal skull morphology |
level 3 |
HP:6000673 |
Abnormal CSF N-acetylaspartic acid concentration |
level 3 |
HP:0012681 |
Abnormal pineal morphology |
level 3 |
HP:0500166 |
Abnormal circulating gastrin concentration |
level 3 |
HP:0012447 |
Abnormal myelination |
level 3 |
HP:0034977 |
Abnormal pituitary stalk morphology |
level 3 |
HP:0001446 |
Abnormality of the musculature of the upper limbs |
level 3 |
HP:0031101 |
Abnormal circulating antimullerian hormone concentration |
level 3 |
HP:0012099 |
Abnormality of circulating catecholamine level |
level 3 |
HP:0045081 |
Abnormality of body mass index |
level 3 |
HP:0025443 |
Abnormal cardiac atrial physiology |
level 3 |
HP:0031099 |
Abnormal circulating inhibin level |
level 3 |
HP:0012338 |
Abnormal energy expenditure |
level 3 |
HP:0001551 |
Abnormal umbilicus morphology |
level 3 |
HP:0031383 |
Abnormal lymphocyte surface marker expression |
level 3 |
HP:0000356 |
Abnormality of the outer ear |
level 3 |
HP:0100767 |
Abnormal placenta morphology |
level 3 |
HP:0040069 |
Abnormal lower limb bone morphology |
level 3 |
HP:0004360 |
Abnormality of acid-base homeostasis |
level 3 |
HP:0030687 |
Abnormal glucagon level |
level 3 |
HP:0031910 |
Abnormal cranial nerve physiology |
level 3 |
HP:0040127 |
Abnormal sweat homeostasis |
level 3 |
HP:0100886 |
Abnormality of globe location |
level 3 |
HP:0000927 |
Abnormality of skeletal maturation |
level 3 |
HP:0032488 |
Abnormal fecal pH |
level 3 |
HP:0010876 |
Abnormal circulating protein concentration |
level 3 |
HP:0030972 |
Abnormal systemic blood pressure |
level 3 |
HP:0040207 |
Abnormal CSF biopterin concentration |
level 3 |
HP:0011730 |
Abnormal central sensory function |
level 3 |
HP:0012415 |
Abnormal blood gas level |
level 3 |
HP:0034190 |
Abnormal fetal cardiovascular physiology |
level 3 |
HP:0001437 |
Abnormality of the musculature of the lower limbs |
level 3 |
HP:0033170 |
Abnormal skinfold thickness measurement |
level 3 |
HP:0033799 |
Abnormal circulating sex hormone concentration |
level 3 |
HP:0031073 |
Abnormal response to endocrine stimulation test |
level 3 |
HP:0034899 |
Abnormal amniotic fluid protein concentration |
level 3 |
HP:0031653 |
Abnormal heart valve physiology |
level 3 |
HP:0034552 |
Abnormal peroxisomal morphology |
level 3 |
HP:0500238 |
Abnormal CSF albumin concentration |
level 3 |
HP:0034442 |
Abnormal circulating erythropoietin concentration |
level 3 |
HP:0025640 |
Abnormal urinary mineral level |
level 3 |
HP:0012243 |
Abnormal reproductive system morphology |
level 3 |
HP:0033796 |
Abnormal leukocyte physiology |
level 3 |
HP:0012769 |
Abnormal arm span |
level 3 |
HP:0031871 |
Abnormal Langerhans cell morphology |
level 3 |
HP:0010936 |
Abnormality of the lower urinary tract |
level 3 |
HP:0012145 |
Abnormality of multiple cell lineages in the bone marrow |
level 3 |
HP:0004930 |
Abnormality of the pulmonary vasculature |
level 3 |
HP:0031818 |
Abnormal waist to hip ratio |
level 3 |
HP:0031850 |
Abnormal hematocrit |
level 3 |
HP:0002916 |
Abnormality of chromosome segregation |
level 3 |
HP:0032226 |
Abnormal sebaceous gland morphology |
level 3 |
HP:0030684 |
Abnormal adiponectin level |
level 3 |
HP:0500183 |
Abnormal CSF carboxylic acid concentration |
level 3 |
HP:0030872 |
Abnormal cardiac ventricular function |
level 3 |
HP:0011442 |
Abnormal central motor function |
level 3 |
HP:0031416 |
Abnormal nasal mucus secretion |
level 3 |
HP:0006490 |
Abnormal lower-limb metaphysis morphology |
level 3 |
HP:0012285 |
Abnormal hypothalamus physiology |
level 3 |
HP:0009810 |
Abnormality of upper limb joint |
level 3 |
HP:0004312 |
Abnormal reticulocyte morphology |
level 3 |
HP:0011805 |
Abnormal skeletal muscle morphology |
level 3 |
HP:0025065 |
Abnormal mean corpuscular volume |
level 3 |
HP:0020047 |
Abnormal myeloid cell morphology |
level 3 |
HP:0031602 |
Abnormal mucociliary clearance |
level 3 |
HP:0031685 |
Abnormal stool composition |
level 3 |
HP:0031377 |
Abnormal cell proliferation |
level 3 |
HP:0012252 |
Abnormal respiratory system morphology |
level 3 |
HP:0010968 |
Abnormality of liposaccharide metabolism |
level 3 |
HP:0011766 |
Abnormal parathyroid morphology |
level 3 |
HP:0011804 |
Abnormal muscle physiology |
level 3 |
HP:0003256 |
Abnormality of the coagulation cascade |
level 3 |
HP:0040224 |
Abnormality of fibrinolysis |
level 3 |
HP:0000496 |
Abnormality of eye movement |
level 3 |
HP:0004404 |
Abnormal nipple morphology |
level 3 |
HP:0011875 |
Abnormal platelet morphology |
level 3 |
HP:0100765 |
Abnormality of the tonsils |
level 3 |
HP:0034370 |
Abnormal muscle tissue metabolite concentration |
level 3 |
HP:0012647 |
Abnormal inflammatory response |
level 3 |
HP:0040084 |
Abnormal circulating renin |
level 3 |
HP:0007686 |
Abnormal pupillary function |
level 3 |
HP:0001454 |
Abnormality of the upper arm |
level 3 |
HP:0011043 |
Abnormal circulating adrenocorticotropin concentration |
level 3 |
HP:0031476 |
Abnormal buccal mucosa cell morphology |
level 3 |
HP:0004328 |
Abnormal anterior eye segment morphology |
level 3 |
HP:0011902 |
Abnormal hemoglobin |
level 3 |
HP:0032120 |
Abnormal peripheral nervous system physiology |
level 3 |
HP:0031411 |
Abnormal chromosome morphology |
level 3 |
HP:0012143 |
Abnormal megakaryocyte morphology |
level 3 |
HP:0030878 |
Abnormality on pulmonary function testing |
level 3 |
HP:0025688 |
Abnormal amyloid beta peptide CSF concentration |
level 3 |
HP:0011111 |
Abnormal immune serum protein physiology |
level 3 |
HP:0011019 |
Abnormality of chromosome condensation |
level 3 |
HP:0012688 |
Abnormality of pineal physiology |
level 3 |
HP:0031389 |
Abnormal MHC II surface expression |
level 3 |
HP:0005368 |
Abnormality of humoral immunity |
level 3 |
HP:0001392 |
Abnormality of the liver |
level 3 |
HP:0033072 |
Abnormal macroscopic urine appearance |
level 3 |
HP:0034263 |
Abnormal vaginal bleeding |
level 3 |
HP:0000359 |
Abnormality of the inner ear |
level 3 |
HP:0034644 |
Abnormal liver metabolite concentration |
level 3 |
HP:0030085 |
Abnormal CSF lactate concentration |
level 3 |
HP:0034916 |
Abnormal anus physiology |
level 3 |
HP:0000971 |
Abnormal sweat gland morphology |
level 3 |
HP:0004361 |
Abnormal circulating leptin concentration |
level 3 |
HP:0025155 |
Abnormality of hepatobiliary system physiology |
level 3 |
HP:0002585 |
Abnormal peritoneum morphology |
level 3 |
HP:0012535 |
Abnormal synaptic transmission |
level 3 |
HP:0002973 |
Abnormal forearm morphology |
level 3 |
HP:0034430 |
Abnormal joint physiology |
level 3 |
HP:0100508 |
Abnormality of vitamin metabolism |
level 3 |
HP:0040172 |
Abnormality of occipitofrontalis muscle |
level 3 |
HP:0031331 |
Abnormal cardiomyocyte morphology |
level 3 |
HP:0100763 |
Abnormality of the lymphatic system |
level 3 |
HP:0034698 |
Abnormal aromatase activity |
level 3 |
HP:0011446 |
Abnormality of mental function |
level 3 |
HP:0000553 |
Abnormal uvea morphology |
level 3 |
HP:0012632 |
Abnormal intraocular pressure |
level 3 |
HP:0010935 |
Abnormality of the upper urinary tract |
level 3 |
HP:0001627 |
Abnormal heart morphology |
level 3 |
HP:0030352 |
Abnormal serum insulin-like growth factor 1 level |
level 3 |
HP:0001965 |
Abnormal scalp morphology |
level 3 |
HP:0006476 |
Abnormality of the pancreatic islet cells |
level 3 |
HP:0006707 |
Abnormality of the hepatic vasculature |
level 3 |
HP:0004408 |
Abnormality of the sense of smell |
level 3 |
HP:0030163 |
Abnormal vascular physiology |
level 3 |
HP:0012129 |
Abnormality of bone marrow stromal cells |
level 3 |
HP:0410014 |
Abnormal ganglion morphology |
level 3 |
HP:0100766 |
Abnormal lymphatic vessel morphology |
level 3 |
HP:0040203 |
Abnormal CSF neopterin concentration |
level 3 |
HP:0032943 |
Abnormal urine pH |
level 3 |
HP:0034858 |
Abnormal leukocyte enzyme concentration or activity |
level 3 |
HP:0000504 |
Abnormality of vision |
level 3 |
HP:0030453 |
Abnormal visual electrophysiology |
level 3 |
HP:0011893 |
Abnormal leukocyte count |
level 3 |
HP:0009809 |
Abnormal upper limb metaphysis morphology |
level 3 |
HP:0012135 |
Abnormal granulocytopoietic cell morphology |
level 3 |
HP:0011767 |
Abnormality of the parathyroid physiology |
level 3 |
HP:0040070 |
Abnormal upper limb bone morphology |
level 3 |
HP:0030829 |
Abnormal breath sound |
level 3 |
HP:0010987 |
Abnormal cellular immune system morphology |
level 3 |
HP:0011028 |
Abnormality of blood circulation |
level 3 |
HP:4000056 |
Abnormal apoptosis |
level 3 |
HP:0500020 |
Abnormal cardiac biomarker test |
level 3 |
HP:0500012 |
Abnormal gonadotropin-releasing hormone concentration |
level 3 |
HP:0025427 |
Abnormal bronchus physiology |
level 3 |
HP:0001743 |
Abnormality of the spleen |
level 3 |
HP:0000759 |
Abnormal peripheral nervous system morphology |
level 3 |
HP:0012130 |
Abnormal erythroid lineage cell morphology |
level 3 |
HP:0004332 |
Abnormal lymphocyte morphology |
level 3 |
HP:0003254 |
Abnormality of DNA repair |
level 3 |
HP:0032485 |
Abnormal fecal osmolality |
level 3 |
HP:0500017 |
Abnormal cardiac catheterization |
level 3 |
HP:0500016 |
Abnormal cardiac MRI |
level 3 |
HP:0032481 |
Abnormal pituitary glycoprotein hormone alpha subunit level |
level 3 |
HP:6000062 |
Abnormal nipple discharge |
level 3 |
HP:0001732 |
Abnormality of the pancreas |
level 3 |
HP:0011620 |
Abnormality of abdominal situs |
level 3 |
HP:0031285 |
Abnormal perifollicular morphology |
level 3 |
HP:0000591 |
Abnormal sclera morphology |
level 3 |
HP:0034200 |
Abnormal CSF homovanillic acid concentration |
level 3 |
HP:4000183 |
Abnormal erythrocyte adenosine triphosphate concentration |
level 3 |
HP:0100530 |
Abnormal circulating calcium-phosphate regulating hormone concentration |
level 3 |
HP:0100685 |
Abnormal Sharpey fiber morphology |
level 3 |
HP:0025590 |
Abnormal extraocular muscle physiology |
level 3 |
HP:0030338 |
Abnormal circulating gonadotropin concentration |
level 3 |
HP:0012503 |
Abnormal pituitary gland morphology |
level 3 |
HP:0040068 |
Abnormality of limb bone |
level 3 |
HP:0002733 |
Abnormal lymph node morphology |
level 3 |
HP:0025546 |
Abnormal mean corpuscular hemoglobin concentration |
level 3 |
HP:0410009 |
Abnormality of the somatic nervous system |
level 3 |
HP:0030272 |
Abnormal erythrocyte enzyme concentration or activity |
level 3 |
HP:0011733 |
Abnormality of adrenal physiology |
level 3 |
HP:0010948 |
Abnormal fetal cardiovascular morphology |
level 3 |
HP:0011842 |
Abnormal skeletal morphology |
level 3 |
HP:0034915 |
Abnormal anus morphology |
level 3 |
HP:0002813 |
Abnormal limb bone morphology |
level 3 |
HP:0031340 |
Abnormal lysosomal morphology |