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Biotic Interaction Template

A template for biotic interactions

URI: https://w3id.org/ontogpt/biotic_interaction

Name: biotic-interaction-template

Schema Diagram

erDiagram Container { } BioticInteraction { } InteractionType { string id string label } Taxon { string id string label } Container ||--}o BioticInteraction : "interactions" BioticInteraction ||--|o Taxon : "source_taxon" BioticInteraction ||--|o Taxon : "target_taxon" BioticInteraction ||--|o InteractionType : "interaction_type"

Classes

Class Description
AnnotatorResult None
Any None
BioticInteraction None
CompoundExpression None
        Triple Abstract parent for Relation Extraction tasks
Container None
ExtractionResult A result of extracting knowledge on text
NamedEntity None
        InteractionType None
        RelationshipType None
        Taxon None
Publication None
TextWithTriples None

Slots

Slot Description
abstract The abstract of the publication
combined_text
extracted_object The complex objects extracted from the text
full_text The full text of the publication
id A unique identifier for the named entity
input_id
input_text
input_title
interaction_type the type of interaction
interactions
label The label (name) of the named thing
named_entities Named entities extracted from the text
object
object_id
object_qualifier An optional qualifier or modifier for the object of the statement, e
object_text
predicate
prompt
publication
qualifier A qualifier for the statements, e
raw_completion_output
source_taxon the taxon that is the subject of the interaction
subject
subject_qualifier An optional qualifier or modifier for the subject of the statement, e
subject_text
target_taxon the taxon that is the object of the interaction
title The title of the publication
triples

Enumerations

Enumeration Description
NullDataOptions

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description