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metabolic Process Template

A template for GO-CAMs


Name: metabolic-process-template

Schema Diagram

erDiagram MetabolicProcess { string label string description stringList synonyms string id } MetabolicProcessCategory { string id string label } ChemicalEntity { string id string label } Any { } ExtractionResult { string input_id string input_title string input_text string raw_completion_output string prompt } NamedEntity { string id string label } CompoundExpression { } Triple { string qualifier } TextWithTriples { } TextWithEntity { } RelationshipType { string id string label } Publication { string id string title string abstract string combined_text string full_text } AnnotatorResult { string subject_text string object_id string object_text } MetabolicProcess ||--}o MetabolicProcessCategory : "subclass_of" MetabolicProcess ||--|o MetabolicProcessCategory : "category" MetabolicProcess ||--}o ChemicalEntity : "inputs" MetabolicProcess ||--}o ChemicalEntity : "outputs" ExtractionResult ||--|o Any : "extracted_object" ExtractionResult ||--}o Any : "named_entities" Triple ||--|o NamedEntity : "subject" Triple ||--|o RelationshipType : "predicate" Triple ||--|o NamedEntity : "object" Triple ||--|o NamedEntity : "subject_qualifier" Triple ||--|o NamedEntity : "object_qualifier" TextWithTriples ||--|o Publication : "publication" TextWithTriples ||--}o Triple : "triples" TextWithEntity ||--|o Publication : "publication" TextWithEntity ||--}o NamedEntity : "entities"


Class Description
AnnotatorResult None
Any None
CompoundExpression None
        Triple Abstract parent for Relation Extraction tasks
ExtractionResult A result of extracting knowledge on text
NamedEntity None
        ChemicalEntity None
        MetabolicProcess None
        MetabolicProcessCategory None
        RelationshipType None
Publication None
TextWithEntity A text containing one or more instances of a single type of entity.
TextWithTriples A text containing one or more relations of the Triple type.


Slot Description
abstract The abstract of the publication
category the category of metabolic process, e
description a textual description of the metabolic process
extracted_object The complex objects extracted from the text
full_text The full text of the publication
id A unique identifier for the named entity
inputs the inputs of the metabolic process
label the name of the metabolic process
named_entities Named entities extracted from the text
object_qualifier An optional qualifier or modifier for the object of the statement, e
outputs the outputs of the metabolic process
qualifier A qualifier for the statements, e
subclass_of a semicolon separated list of broader metabolic processes which this is a sub...
subject_qualifier An optional qualifier or modifier for the subject of the statement, e
synonyms alternative names of the metabolic process
title The title of the publication


Enumeration Description


Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE


Subset Description