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metabolic Process Template

A template for GO-CAMs


Name: metabolic-process-template

Schema Diagram

erDiagram MetabolicProcess { string label string description stringList synonyms string id } MetabolicProcessCategory { string id string label } ChemicalEntity { string id string label } Any { } ExtractionResult { string input_id string input_title string input_text string raw_completion_output string prompt } NamedEntity { string id string label } CompoundExpression { } Triple { string qualifier } TextWithTriples { } RelationshipType { string id string label } Publication { string id string title string abstract string combined_text string full_text } AnnotatorResult { string subject_text string object_id string object_text } MetabolicProcess ||--}o MetabolicProcessCategory : "subclass_of" MetabolicProcess ||--|o MetabolicProcessCategory : "category" MetabolicProcess ||--}o ChemicalEntity : "inputs" MetabolicProcess ||--}o ChemicalEntity : "outputs" ExtractionResult ||--|o Any : "extracted_object" ExtractionResult ||--}o Any : "named_entities" Triple ||--|o NamedEntity : "subject" Triple ||--|o RelationshipType : "predicate" Triple ||--|o NamedEntity : "object" Triple ||--|o NamedEntity : "subject_qualifier" Triple ||--|o NamedEntity : "object_qualifier" TextWithTriples ||--|o Publication : "publication" TextWithTriples ||--}o Triple : "triples"


Class Description
AnnotatorResult None
Any None
CompoundExpression None
        Triple Abstract parent for Relation Extraction tasks
ExtractionResult A result of extracting knowledge on text
NamedEntity None
        ChemicalEntity None
        MetabolicProcess None
        MetabolicProcessCategory None
        RelationshipType None
Publication None
TextWithTriples None


Slot Description
abstract The abstract of the publication
category the category of metabolic process, e
description a textual description of the metabolic process
extracted_object The complex objects extracted from the text
full_text The full text of the publication
id A unique identifier for the named entity
inputs the inputs of the metabolic process
label the name of the metabolic process
named_entities Named entities extracted from the text
object_qualifier An optional qualifier or modifier for the object of the statement, e
outputs the outputs of the metabolic process
qualifier A qualifier for the statements, e
subclass_of a semicolon separated list of broader metabolic processes which this is a sub...
subject_qualifier An optional qualifier or modifier for the subject of the statement, e
synonyms alternative names of the metabolic process
title The title of the publication


Enumeration Description


Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE


Subset Description