Class: DiagnosticProceduretoPhenotypeAssociation

A triple representing a relationship between a diagnostic procedure and an associated phenotype, e.g., "blood pressure measurement" is associated with "high blood pressure".

URI: diag:DiagnosticProceduretoPhenotypeAssociation

erDiagram DiagnosticProceduretoPhenotypeAssociation { string qualifier } NamedEntity { string id string label } Phenotype { string id string label } ProcedureToPhenotypePredicate { string id string label } DiagnosticProcedure { string id string label } DiagnosticProceduretoPhenotypeAssociation ||--|o DiagnosticProcedure : "subject" DiagnosticProceduretoPhenotypeAssociation ||--|o ProcedureToPhenotypePredicate : "predicate" DiagnosticProceduretoPhenotypeAssociation ||--}o Phenotype : "object" DiagnosticProceduretoPhenotypeAssociation ||--|o NamedEntity : "subject_qualifier" DiagnosticProceduretoPhenotypeAssociation ||--|o NamedEntity : "object_qualifier"

Inheritance

CompoundExpression
- Triple
  - DiagnosticProceduretoPhenotypeAssociation

Slots

Name	Cardinality and Range	Description	Inheritance
subject	0..1 DiagnosticProcedure	A diagnostic procedure yielding a result, which in turn may be interpreted as...	Triple
predicate	0..1 ProcedureToPhenotypePredicate	The relationship type, e	Triple
object	0..* Phenotype	The observable physical or biochemical characteristics of a patient	Triple
qualifier	0..1 String	A qualifier for the statements, e	Triple
subject_qualifier	0..1 NamedEntity	An optional qualifier or modifier for the procedure	Triple
object_qualifier	0..1 NamedEntity	An optional qualifier or modifier for the phenotype	Triple

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/ontogpt/diagnostic_procedure

Mappings

Mapping Type	Mapped Value
self	diag:DiagnosticProceduretoPhenotypeAssociation
native	diag:DiagnosticProceduretoPhenotypeAssociation

LinkML Source

Direct

name: DiagnosticProceduretoPhenotypeAssociation
description: A triple representing a relationship between a diagnostic procedure and
  an associated phenotype, e.g., "blood pressure measurement" is associated with "high
  blood pressure".
from_schema: http://w3id.org/ontogpt/diagnostic_procedure
is_a: Triple
slot_usage:
  subject:
    name: subject
    description: A diagnostic procedure yielding a result, which in turn may be interpreted
      as a phenotype. Procedures include "heart rate measurement", "blood pressure
      measurement", "oxygen saturation measurement", etc. In practice, procedures
      may be named based on what they measure, with the "measurement" part left implicit.
    domain_of:
    - Triple
    range: DiagnosticProcedure
  object:
    name: object
    description: The observable physical or biochemical characteristics of a patient.
      Not equivalent to a disease state, but may contribute to a diagnosis.
    multivalued: true
    domain_of:
    - Triple
    range: Phenotype
  predicate:
    name: predicate
    description: The relationship type, e.g. RELATED_TO
    domain_of:
    - Triple
    range: ProcedureToPhenotypePredicate
  subject_qualifier:
    name: subject_qualifier
    description: An optional qualifier or modifier for the procedure.
    domain_of:
    - Triple
    range: NamedEntity
  object_qualifier:
    name: object_qualifier
    description: An optional qualifier or modifier for the phenotype.
    domain_of:
    - Triple
    range: NamedEntity

Induced

name: DiagnosticProceduretoPhenotypeAssociation
description: A triple representing a relationship between a diagnostic procedure and
  an associated phenotype, e.g., "blood pressure measurement" is associated with "high
  blood pressure".
from_schema: http://w3id.org/ontogpt/diagnostic_procedure
is_a: Triple
slot_usage:
  subject:
    name: subject
    description: A diagnostic procedure yielding a result, which in turn may be interpreted
      as a phenotype. Procedures include "heart rate measurement", "blood pressure
      measurement", "oxygen saturation measurement", etc. In practice, procedures
      may be named based on what they measure, with the "measurement" part left implicit.
    domain_of:
    - Triple
    range: DiagnosticProcedure
  object:
    name: object
    description: The observable physical or biochemical characteristics of a patient.
      Not equivalent to a disease state, but may contribute to a diagnosis.
    multivalued: true
    domain_of:
    - Triple
    range: Phenotype
  predicate:
    name: predicate
    description: The relationship type, e.g. RELATED_TO
    domain_of:
    - Triple
    range: ProcedureToPhenotypePredicate
  subject_qualifier:
    name: subject_qualifier
    description: An optional qualifier or modifier for the procedure.
    domain_of:
    - Triple
    range: NamedEntity
  object_qualifier:
    name: object_qualifier
    description: An optional qualifier or modifier for the phenotype.
    domain_of:
    - Triple
    range: NamedEntity
attributes:
  subject:
    name: subject
    description: A diagnostic procedure yielding a result, which in turn may be interpreted
      as a phenotype. Procedures include "heart rate measurement", "blood pressure
      measurement", "oxygen saturation measurement", etc. In practice, procedures
      may be named based on what they measure, with the "measurement" part left implicit.
    from_schema: http://w3id.org/ontogpt/diagnostic_procedure
    rank: 1000
    alias: subject
    owner: DiagnosticProceduretoPhenotypeAssociation
    domain_of:
    - Triple
    range: DiagnosticProcedure
  predicate:
    name: predicate
    description: The relationship type, e.g. RELATED_TO
    from_schema: http://w3id.org/ontogpt/diagnostic_procedure
    rank: 1000
    alias: predicate
    owner: DiagnosticProceduretoPhenotypeAssociation
    domain_of:
    - Triple
    range: ProcedureToPhenotypePredicate
  object:
    name: object
    description: The observable physical or biochemical characteristics of a patient.
      Not equivalent to a disease state, but may contribute to a diagnosis.
    from_schema: http://w3id.org/ontogpt/diagnostic_procedure
    rank: 1000
    multivalued: true
    alias: object
    owner: DiagnosticProceduretoPhenotypeAssociation
    domain_of:
    - Triple
    range: Phenotype
  qualifier:
    name: qualifier
    description: A qualifier for the statements, e.g. "NOT" for negation
    from_schema: http://w3id.org/ontogpt/diagnostic_procedure
    rank: 1000
    alias: qualifier
    owner: DiagnosticProceduretoPhenotypeAssociation
    domain_of:
    - Triple
    range: string
  subject_qualifier:
    name: subject_qualifier
    description: An optional qualifier or modifier for the procedure.
    from_schema: http://w3id.org/ontogpt/diagnostic_procedure
    rank: 1000
    alias: subject_qualifier
    owner: DiagnosticProceduretoPhenotypeAssociation
    domain_of:
    - Triple
    range: NamedEntity
  object_qualifier:
    name: object_qualifier
    description: An optional qualifier or modifier for the phenotype.
    from_schema: http://w3id.org/ontogpt/diagnostic_procedure
    rank: 1000
    alias: object_qualifier
    owner: DiagnosticProceduretoPhenotypeAssociation
    domain_of:
    - Triple
    range: NamedEntity