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Class: Document

A document that contains biological or biomedical concepts.

URI: go_terms:Document

erDiagram Document { } NamedEntity { string id string label } Publication { string id string title string abstract string combined_text string full_text } MolecularFunction { string id string label } CellularComponent { string id string label } BiologicalProcess { string id string label } Document ||--}o BiologicalProcess : "biologicalprocesses" Document ||--}o CellularComponent : "cellularcomponents" Document ||--}o MolecularFunction : "molecularfunctions" Document ||--|o Publication : "publication" Document ||--}o NamedEntity : "entities"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
biologicalprocesses *
BiologicalProcess		 One or more biological processes, as defined by the Gene Ontology direct
cellularcomponents *
CellularComponent		 One or more cellular components, as defined by the Gene Ontology direct
molecularfunctions *
MolecularFunction		 One or more molecular functions, as defined by the Gene Ontology direct
publication 0..1
Publication		 TextWithEntity
entities *
NamedEntity		 TextWithEntity

Identifier and Mapping Information

Schema Source

  • from schema: http://w3id.org/ontogpt/go_terms

Mappings

Mapping Type Mapped Value
self go_terms:Document
native go_terms:Document

LinkML Source

Direct

name: Document
description: A document that contains biological or biomedical concepts.
from_schema: http://w3id.org/ontogpt/go_terms
is_a: TextWithEntity
attributes:
  biologicalprocesses:
    name: biologicalprocesses
    annotations:
      prompt:
        tag: prompt
        value: 'A semi-colon separated list of biological processes, for example:
          nuclear axial expansion; intracellular transport; medial surface of mandible;
          ribosomal subunit export from nucleus; pole cell development'
    description: One or more biological processes, as defined by the Gene Ontology.
    from_schema: http://w3id.org/ontogpt/go_terms
    rank: 1000
    multivalued: true
    domain_of:
    - Document
    range: BiologicalProcess
  cellularcomponents:
    name: cellularcomponents
    annotations:
      prompt:
        tag: prompt
        value: 'A semi-colon separated list of cellular components and structures,
          for example: tubulin complex; proteasome complex; cytoplasm; keratohyalin
          granule; nucleus'
    description: One or more cellular components, as defined by the Gene Ontology.
    from_schema: http://w3id.org/ontogpt/go_terms
    rank: 1000
    multivalued: true
    domain_of:
    - Document
    range: CellularComponent
  molecularfunctions:
    name: molecularfunctions
    annotations:
      prompt:
        tag: prompt
        value: 'A semi-colon separated list of molecular functions, for example: catalytic
          activity; amine binding; peptide receptor activity; oxygen carrier activity;
          structural constituent of cytoskeleton'
    description: One or more molecular functions, as defined by the Gene Ontology.
    from_schema: http://w3id.org/ontogpt/go_terms
    rank: 1000
    multivalued: true
    domain_of:
    - Document
    range: MolecularFunction
tree_root: true

Induced

name: Document
description: A document that contains biological or biomedical concepts.
from_schema: http://w3id.org/ontogpt/go_terms
is_a: TextWithEntity
attributes:
  biologicalprocesses:
    name: biologicalprocesses
    annotations:
      prompt:
        tag: prompt
        value: 'A semi-colon separated list of biological processes, for example:
          nuclear axial expansion; intracellular transport; medial surface of mandible;
          ribosomal subunit export from nucleus; pole cell development'
    description: One or more biological processes, as defined by the Gene Ontology.
    from_schema: http://w3id.org/ontogpt/go_terms
    rank: 1000
    multivalued: true
    alias: biologicalprocesses
    owner: Document
    domain_of:
    - Document
    range: BiologicalProcess
  cellularcomponents:
    name: cellularcomponents
    annotations:
      prompt:
        tag: prompt
        value: 'A semi-colon separated list of cellular components and structures,
          for example: tubulin complex; proteasome complex; cytoplasm; keratohyalin
          granule; nucleus'
    description: One or more cellular components, as defined by the Gene Ontology.
    from_schema: http://w3id.org/ontogpt/go_terms
    rank: 1000
    multivalued: true
    alias: cellularcomponents
    owner: Document
    domain_of:
    - Document
    range: CellularComponent
  molecularfunctions:
    name: molecularfunctions
    annotations:
      prompt:
        tag: prompt
        value: 'A semi-colon separated list of molecular functions, for example: catalytic
          activity; amine binding; peptide receptor activity; oxygen carrier activity;
          structural constituent of cytoskeleton'
    description: One or more molecular functions, as defined by the Gene Ontology.
    from_schema: http://w3id.org/ontogpt/go_terms
    rank: 1000
    multivalued: true
    alias: molecularfunctions
    owner: Document
    domain_of:
    - Document
    range: MolecularFunction
  publication:
    name: publication
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    from_schema: http://w3id.org/ontogpt/go_terms
    alias: publication
    owner: Document
    domain_of:
    - TextWithTriples
    - TextWithEntity
    range: Publication
    inlined: true
  entities:
    name: entities
    from_schema: http://w3id.org/ontogpt/go_terms
    rank: 1000
    multivalued: true
    alias: entities
    owner: Document
    domain_of:
    - TextWithEntity
    range: NamedEntity
tree_root: true