Class: DiseaseTreatmentSummary

URI: treatment:DiseaseTreatmentSummary

erDiagram DiseaseTreatmentSummary { } TreatmentAdverseEffect { } AdverseEffect { string id string label } Treatment { string id string label } TreatmentEfficacy { string efficacy } TreatmentMechanism { } Mechanism { string id string label } Drug { string id string label } Disease { string id string label } DiseaseTreatmentSummary ||--|o Disease : "disease" DiseaseTreatmentSummary ||--}o Drug : "drugs" DiseaseTreatmentSummary ||--}o Treatment : "treatments" DiseaseTreatmentSummary ||--}o Treatment : "contraindications" DiseaseTreatmentSummary ||--}o TreatmentMechanism : "treatment_mechanisms" DiseaseTreatmentSummary ||--}o TreatmentEfficacy : "treatment_efficacies" DiseaseTreatmentSummary ||--}o TreatmentAdverseEffect : "treatment_adverse_effects" TreatmentAdverseEffect ||--|o Treatment : "treatment" TreatmentAdverseEffect ||--}o AdverseEffect : "adverse_effects" TreatmentEfficacy ||--|o Treatment : "treatment" TreatmentMechanism ||--|o Treatment : "treatment" TreatmentMechanism ||--|o Mechanism : "mechanism"

Slots

Name	Cardinality and Range	Description	Inheritance
disease	0..1 Disease	the name of the disease that is treated	direct
drugs	0..* Drug	semicolon-separated list of named small molecule drugs	direct
treatments	0..* Treatment	semicolon-separated list of therapies and treatments are indicated for treati...	direct
contraindications	0..* Treatment	semicolon-separated list of therapies and treatments that are contra-indicate...	direct
treatment_mechanisms	0..* TreatmentMechanism	semicolon-separated list of treatment to asterisk-separated mechanism associa...	direct
treatment_efficacies	0..* TreatmentEfficacy	semicolon-separated list of treatment to efficacy associations, e	direct
treatment_adverse_effects	0..* TreatmentAdverseEffect	semicolon-separated list of treatment to adverse effect associations, e	direct

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/ontogpt/treatment

Mappings

Mapping Type	Mapped Value
self	treatment:DiseaseTreatmentSummary
native	treatment:DiseaseTreatmentSummary

LinkML Source

Direct

name: DiseaseTreatmentSummary
from_schema: http://w3id.org/ontogpt/treatment
attributes:
  disease:
    name: disease
    description: the name of the disease that is treated.
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    range: Disease
  drugs:
    name: drugs
    description: semicolon-separated list of named small molecule drugs
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    range: Drug
  treatments:
    name: treatments
    annotations:
      prompt.examples:
        tag: prompt.examples
        value: Imatinib, exercise, surgery
    description: semicolon-separated list of therapies and treatments are indicated
      for treating the disease.
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    range: Treatment
  contraindications:
    name: contraindications
    annotations:
      prompt.examples:
        tag: prompt.examples
        value: Beta-blockers, exercise, surgery
    description: semicolon-separated list of therapies and treatments that are contra-indicated
      for the disease, and should not be used, due to risk of adverse effects.
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    range: Treatment
  treatment_mechanisms:
    name: treatment_mechanisms
    annotations:
      prompt.separator:
        tag: prompt.separator
        value: '*'
    description: semicolon-separated list of treatment to asterisk-separated mechanism
      associations
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    range: TreatmentMechanism
  treatment_efficacies:
    name: treatment_efficacies
    annotations:
      prompt.separator:
        tag: prompt.separator
        value: '*'
    description: semicolon-separated list of treatment to efficacy associations, e.g.
      Imatinib*effective
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    range: TreatmentEfficacy
  treatment_adverse_effects:
    name: treatment_adverse_effects
    annotations:
      prompt.separator:
        tag: prompt.separator
        value: '*'
    description: semicolon-separated list of treatment to adverse effect associations,
      e.g. Imatinib*nausea
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    range: TreatmentAdverseEffect
tree_root: true

Induced

name: DiseaseTreatmentSummary
from_schema: http://w3id.org/ontogpt/treatment
attributes:
  disease:
    name: disease
    description: the name of the disease that is treated.
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    alias: disease
    owner: DiseaseTreatmentSummary
    domain_of:
    - DiseaseTreatmentSummary
    range: Disease
  drugs:
    name: drugs
    description: semicolon-separated list of named small molecule drugs
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    alias: drugs
    owner: DiseaseTreatmentSummary
    domain_of:
    - DiseaseTreatmentSummary
    range: Drug
  treatments:
    name: treatments
    annotations:
      prompt.examples:
        tag: prompt.examples
        value: Imatinib, exercise, surgery
    description: semicolon-separated list of therapies and treatments are indicated
      for treating the disease.
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    alias: treatments
    owner: DiseaseTreatmentSummary
    domain_of:
    - DiseaseTreatmentSummary
    range: Treatment
  contraindications:
    name: contraindications
    annotations:
      prompt.examples:
        tag: prompt.examples
        value: Beta-blockers, exercise, surgery
    description: semicolon-separated list of therapies and treatments that are contra-indicated
      for the disease, and should not be used, due to risk of adverse effects.
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    alias: contraindications
    owner: DiseaseTreatmentSummary
    domain_of:
    - DiseaseTreatmentSummary
    range: Treatment
  treatment_mechanisms:
    name: treatment_mechanisms
    annotations:
      prompt.separator:
        tag: prompt.separator
        value: '*'
    description: semicolon-separated list of treatment to asterisk-separated mechanism
      associations
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    alias: treatment_mechanisms
    owner: DiseaseTreatmentSummary
    domain_of:
    - DiseaseTreatmentSummary
    range: TreatmentMechanism
  treatment_efficacies:
    name: treatment_efficacies
    annotations:
      prompt.separator:
        tag: prompt.separator
        value: '*'
    description: semicolon-separated list of treatment to efficacy associations, e.g.
      Imatinib*effective
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    alias: treatment_efficacies
    owner: DiseaseTreatmentSummary
    domain_of:
    - DiseaseTreatmentSummary
    range: TreatmentEfficacy
  treatment_adverse_effects:
    name: treatment_adverse_effects
    annotations:
      prompt.separator:
        tag: prompt.separator
        value: '*'
    description: semicolon-separated list of treatment to adverse effect associations,
      e.g. Imatinib*nausea
    from_schema: http://w3id.org/ontogpt/treatment
    rank: 1000
    multivalued: true
    alias: treatment_adverse_effects
    owner: DiseaseTreatmentSummary
    domain_of:
    - DiseaseTreatmentSummary
    range: TreatmentAdverseEffect
tree_root: true