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Class: Protein

URI: go_terms_relational:Protein

erDiagram Protein { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
ProteinToGORelationship subject range Protein

Comments

  • Technically gene or protein
  • Can also be UniProt accession, etc

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • PR

  • HGNC

Annotations

property value
annotators gilda:, bioportal:hgnc-nr, sqlite:obo:pr

Schema Source

  • from schema: http://w3id.org/ontogpt/go_terms_relational

Mappings

Mapping Type Mapped Value
self go_terms_relational:Protein
native go_terms_relational:Protein

LinkML Source

Direct

name: Protein
id_prefixes:
- PR
- HGNC
annotations:
  annotators:
    tag: annotators
    value: gilda:, bioportal:hgnc-nr, sqlite:obo:pr
comments:
- Technically gene or protein
- Can also be UniProt accession, etc
from_schema: http://w3id.org/ontogpt/go_terms_relational
is_a: NamedEntity

Induced

name: Protein
id_prefixes:
- PR
- HGNC
annotations:
  annotators:
    tag: annotators
    value: gilda:, bioportal:hgnc-nr, sqlite:obo:pr
comments:
- Technically gene or protein
- Can also be UniProt accession, etc
from_schema: http://w3id.org/ontogpt/go_terms_relational
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/go_terms_relational
    rank: 1000
    identifier: true
    alias: id
    owner: Protein
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/go_terms_relational
    aliases:
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: Protein
    domain_of:
    - NamedEntity
    range: string