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Class: ChemicalEntity

URI: bp:ChemicalEntity

erDiagram ChemicalEntity { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
MetabolicProcess inputs range ChemicalEntity
MetabolicProcess outputs range ChemicalEntity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • CHEBI

Annotations

property value
annotators sqlite:obo:chebi

Schema Source

  • from schema: https://w3id.org/ontogpt/metabolic_process

Mappings

Mapping Type Mapped Value
self bp:ChemicalEntity
native bp:ChemicalEntity

LinkML Source

Direct

name: ChemicalEntity
id_prefixes:
- CHEBI
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:chebi
from_schema: https://w3id.org/ontogpt/metabolic_process
is_a: NamedEntity

Induced

name: ChemicalEntity
id_prefixes:
- CHEBI
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:chebi
from_schema: https://w3id.org/ontogpt/metabolic_process
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    identifier: true
    alias: id
    owner: ChemicalEntity
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: https://w3id.org/ontogpt/metabolic_process
    aliases:
    - name
    slot_uri: rdfs:label
    alias: label
    owner: ChemicalEntity
    domain_of:
    - MetabolicProcess
    - NamedEntity
    range: string