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Class: Organism

URI: eg:Organism

erDiagram Organism { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
Study organisms range Organism

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • NCBITaxon

Annotations

property value
annotators sqlite:obo:ncbitaxon, gilda:

Schema Source

  • from schema: http://w3id.org/ontogpt/metagenome

Mappings

Mapping Type Mapped Value
self eg:Organism
native eg:Organism

LinkML Source

Direct

name: Organism
id_prefixes:
- NCBITaxon
annotations:
  annotators:
    tag: annotators
    value: 'sqlite:obo:ncbitaxon, gilda:'
from_schema: http://w3id.org/ontogpt/metagenome
is_a: NamedEntity

Induced

name: Organism
id_prefixes:
- NCBITaxon
annotations:
  annotators:
    tag: annotators
    value: 'sqlite:obo:ncbitaxon, gilda:'
from_schema: http://w3id.org/ontogpt/metagenome
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    identifier: true
    alias: id
    owner: Organism
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/metagenome
    aliases:
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: Organism
    domain_of:
    - NamedEntity
    range: string