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Class: GeneToReaction

URI: reaction:GeneToReaction

erDiagram GeneToReaction { } Organism { string id string label } Reaction { string label string description stringList synonyms string id } ChemicalEntity { string id string label } ReactionGrouping { string id string label } Gene { string id string label } GeneToReaction ||--|o Gene : "gene" GeneToReaction ||--}o Reaction : "reactions" GeneToReaction ||--|o Organism : "organism" Reaction ||--|o ReactionGrouping : "subclass_of" Reaction ||--}o ChemicalEntity : "left_side" Reaction ||--}o ChemicalEntity : "right_side"

Slots

Name Cardinality and Range Description Inheritance
gene 0..1
Gene		 name of the gene that catalyzes the reaction direct
reactions 0..*
Reaction		 semicolon separated list of reaction equations (e direct
organism 0..1
Organism		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/ontogpt/reaction

Mappings

Mapping Type Mapped Value
self reaction:GeneToReaction
native reaction:GeneToReaction

LinkML Source

Direct

name: GeneToReaction
from_schema: https://w3id.org/ontogpt/reaction
attributes:
  gene:
    name: gene
    description: name of the gene that catalyzes the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    range: Gene
  reactions:
    name: reactions
    description: semicolon separated list of reaction equations (e.g. A+B = C+D) catalyzed
      by the gene
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    multivalued: true
    range: Reaction
    inlined: true
  organism:
    name: organism
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    range: Organism

Induced

name: GeneToReaction
from_schema: https://w3id.org/ontogpt/reaction
attributes:
  gene:
    name: gene
    description: name of the gene that catalyzes the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: gene
    owner: GeneToReaction
    domain_of:
    - GeneToReaction
    - GeneReactionPairing
    range: Gene
  reactions:
    name: reactions
    description: semicolon separated list of reaction equations (e.g. A+B = C+D) catalyzed
      by the gene
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    multivalued: true
    alias: reactions
    owner: GeneToReaction
    domain_of:
    - GeneToReaction
    - ReactionDocument
    range: Reaction
    inlined: true
  organism:
    name: organism
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: organism
    owner: GeneToReaction
    domain_of:
    - GeneToReaction
    - ReactionDocument
    range: Organism