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Class: Reaction

URI: reaction:Reaction

erDiagram Reaction { string label string description stringList synonyms string id } ChemicalEntity { string id string label } ReactionGrouping { string id string label } Reaction ||--|o ReactionGrouping : "subclass_of" Reaction ||--}o ChemicalEntity : "left_side" Reaction ||--}o ChemicalEntity : "right_side"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
label 0..1
String		 the name of the reaction direct
description 0..1
String		 a textual description of the reaction direct
synonyms 0..*
String		 alternative names of the reaction direct
subclass_of 0..1
ReactionGrouping		 the category to which this biological process belongs direct
left_side 0..*
ChemicalEntity		 semicolon separated list of chemical entities on the left side direct
right_side 0..*
ChemicalEntity		 semicolon separated list of chemical entities on the right side direct
id 1..1
String		 A unique identifier for the named entity NamedEntity

Usages

used by used in type used
GeneToReaction reactions range Reaction
ReactionDocument reactions range Reaction
GeneReactionPairing reaction range Reaction

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/ontogpt/reaction

Mappings

Mapping Type Mapped Value
self reaction:Reaction
native reaction:Reaction

LinkML Source

Direct

name: Reaction
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity
attributes:
  label:
    name: label
    description: the name of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
  description:
    name: description
    description: a textual description of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
  synonyms:
    name: synonyms
    description: alternative names of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    multivalued: true
  subclass_of:
    name: subclass_of
    description: the category to which this biological process belongs
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    range: ReactionGrouping
  left_side:
    name: left_side
    description: semicolon separated list of chemical entities on the left side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    multivalued: true
    range: ChemicalEntity
  right_side:
    name: right_side
    description: semicolon separated list of chemical entities on the right side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    multivalued: true
    range: ChemicalEntity

Induced

name: Reaction
from_schema: https://w3id.org/ontogpt/reaction
is_a: NamedEntity
attributes:
  label:
    name: label
    description: the name of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: label
    owner: Reaction
    domain_of:
    - Reaction
    - NamedEntity
    range: string
  description:
    name: description
    description: a textual description of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: description
    owner: Reaction
    domain_of:
    - Reaction
    range: string
  synonyms:
    name: synonyms
    description: alternative names of the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    multivalued: true
    alias: synonyms
    owner: Reaction
    domain_of:
    - Reaction
    range: string
  subclass_of:
    name: subclass_of
    description: the category to which this biological process belongs
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: subclass_of
    owner: Reaction
    domain_of:
    - Reaction
    range: ReactionGrouping
  left_side:
    name: left_side
    description: semicolon separated list of chemical entities on the left side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    multivalued: true
    alias: left_side
    owner: Reaction
    domain_of:
    - Reaction
    range: ChemicalEntity
  right_side:
    name: right_side
    description: semicolon separated list of chemical entities on the right side
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    multivalued: true
    alias: right_side
    owner: Reaction
    domain_of:
    - Reaction
    range: ChemicalEntity
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    identifier: true
    alias: id
    owner: Reaction
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true