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Class: HumanPhenotype

URI: human_phenotype:HumanPhenotype

erDiagram HumanPhenotype { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
HumanPhenotypeSet phenotypes range HumanPhenotype

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • HP

Annotations

property value
annotators sqlite:obo:hp, sqlite:obo:mondo, sqlite:obo:mesh, sqlite:obo:ncit
Examples are ascites, fever, pain, seizure, increased intracranial
pressure, lactic acidosis.

Schema Source

  • from schema: http://w3id.org/ontogpt/human_phenotype

Mappings

Mapping Type Mapped Value
self human_phenotype:HumanPhenotype
native human_phenotype:HumanPhenotype

LinkML Source

Direct

name: HumanPhenotype
id_prefixes:
- HP
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hp, sqlite:obo:mondo, sqlite:obo:mesh, sqlite:obo:ncit
  prompt:
    tag: prompt
    value: "the name of a human phenotype or symptom.\n Examples are ascites, fever,\
      \ pain, seizure, increased intracranial\n pressure, lactic acidosis."
from_schema: http://w3id.org/ontogpt/human_phenotype
is_a: NamedEntity

Induced

name: HumanPhenotype
id_prefixes:
- HP
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hp, sqlite:obo:mondo, sqlite:obo:mesh, sqlite:obo:ncit
  prompt:
    tag: prompt
    value: "the name of a human phenotype or symptom.\n Examples are ascites, fever,\
      \ pain, seizure, increased intracranial\n pressure, lactic acidosis."
from_schema: http://w3id.org/ontogpt/human_phenotype
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/human_phenotype
    rank: 1000
    identifier: true
    alias: id
    owner: HumanPhenotype
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/human_phenotype
    aliases:
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: HumanPhenotype
    domain_of:
    - NamedEntity
    range: string