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Class: Symptom

A condition or phenotype resulting from an abnormal health state. For example: Low serum calcitriol, hypoplasia of the thymus, chronic cough, aortic stiffness, low pulse pressure

URI: maxo_extract:Symptom

erDiagram Symptom { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
MaxoAnnotations symptoms range Symptom
ActionAnnotationRelationship object range Symptom

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • HP

Annotations

property value
annotators sqlite:obo:hp, sqlite:obo:mondo, sqlite:obo:ncit

Schema Source

  • from schema: http://w3id.org/ontogpt/maxo

Mappings

Mapping Type Mapped Value
self maxo_extract:Symptom
native maxo_extract:Symptom

LinkML Source

Direct

name: Symptom
id_prefixes:
- HP
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hp, sqlite:obo:mondo, sqlite:obo:ncit
description: 'A condition or phenotype resulting from an abnormal health state. For
  example: Low serum calcitriol, hypoplasia of the thymus, chronic cough, aortic stiffness,
  low pulse pressure'
from_schema: http://w3id.org/ontogpt/maxo
is_a: NamedEntity

Induced

name: Symptom
id_prefixes:
- HP
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hp, sqlite:obo:mondo, sqlite:obo:ncit
description: 'A condition or phenotype resulting from an abnormal health state. For
  example: Low serum calcitriol, hypoplasia of the thymus, chronic cough, aortic stiffness,
  low pulse pressure'
from_schema: http://w3id.org/ontogpt/maxo
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/maxo
    rank: 1000
    identifier: true
    alias: id
    owner: Symptom
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/maxo
    aliases:
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: Symptom
    domain_of:
    - NamedEntity
    range: string