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Class: GeneReactionPairing

URI: reaction:GeneReactionPairing

erDiagram GeneReactionPairing { } Reaction { string label string description stringList synonyms string id } ChemicalEntity { string id string label } ReactionGrouping { string id string label } Gene { string id string label } GeneReactionPairing ||--|o Gene : "gene" GeneReactionPairing ||--|o Reaction : "reaction" Reaction ||--|o ReactionGrouping : "subclass_of" Reaction ||--}o ChemicalEntity : "left_side" Reaction ||--}o ChemicalEntity : "right_side"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
gene 0..1
Gene		 name of the gene that catalyzes the reaction direct
reaction 0..1
Reaction		 equation describing the reaction (e direct

Usages

used by used in type used
ReactionDocument gene_reaction_pairings range GeneReactionPairing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/ontogpt/reaction

Mappings

Mapping Type Mapped Value
self reaction:GeneReactionPairing
native reaction:GeneReactionPairing

LinkML Source

Direct

name: GeneReactionPairing
from_schema: https://w3id.org/ontogpt/reaction
is_a: CompoundExpression
attributes:
  gene:
    name: gene
    description: name of the gene that catalyzes the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    range: Gene
  reaction:
    name: reaction
    description: equation describing the reaction (e.g. A+B = C+D) catalyzed by the
      gene
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    range: Reaction

Induced

name: GeneReactionPairing
from_schema: https://w3id.org/ontogpt/reaction
is_a: CompoundExpression
attributes:
  gene:
    name: gene
    description: name of the gene that catalyzes the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    alias: gene
    owner: GeneReactionPairing
    domain_of:
    - GeneToReaction
    - GeneReactionPairing
    range: Gene
  reaction:
    name: reaction
    description: equation describing the reaction (e.g. A+B = C+D) catalyzed by the
      gene
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: reaction
    owner: GeneReactionPairing
    domain_of:
    - GeneReactionPairing
    range: Reaction